Variant report

Variant	rs9595780
Chromosome Location	chr13:48350624-48350625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10162028	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17070772	0.92[EUR][1000 genomes]
rs74073524	0.86[AFR][1000 genomes]
rs7994989	0.89[AFR][1000 genomes]
rs9316333	0.89[AFR][1000 genomes]
rs9591103	1.00[YRI][hapmap]
rs9591104	1.00[YRI][hapmap]
rs9591105	0.90[AFR][1000 genomes]
rs9591111	0.86[AFR][1000 genomes]
rs9595770	0.92[EUR][1000 genomes]
rs9595776	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9595777	1.00[YRI][hapmap]
rs9595778	0.91[ASW][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap]
rs9595781	0.93[AFR][1000 genomes]
rs9595782	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv561589	chr13:48251736-48420218	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9595780	LPAR6	cis	lymphoblastoid	seeQTL
rs9595780	RCBTB2	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48350400-48356000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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