Variant report
Variant | rs9591111 |
---|---|
Chromosome Location | chr13:48365591-48365592 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10162028 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs13378665 | 1.00[AMR][1000 genomes] |
rs1998658 | 0.83[AMR][1000 genomes] |
rs7319088 | 1.00[AMR][1000 genomes] |
rs73477178 | 0.83[AMR][1000 genomes] |
rs73483215 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74073524 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7994989 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9316333 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9591095 | 0.83[AMR][1000 genomes] |
rs9591105 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9591106 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9595765 | 1.00[AMR][1000 genomes] |
rs9595780 | 0.86[AFR][1000 genomes] |
rs9595781 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9595782 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9595788 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3510679 | chr13:48236624-48498185 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | esv3510680 | chr13:48236624-48498185 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv561589 | chr13:48251736-48420218 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv561590 | chr13:48350699-48399027 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:48365200-48366000 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |