Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10162028	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13378665	1.00[AMR][1000 genomes]
rs1998658	0.83[AMR][1000 genomes]
rs7319088	1.00[AMR][1000 genomes]
rs73477178	0.83[AMR][1000 genomes]
rs73483215	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74073524	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7994989	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9591095	0.83[AMR][1000 genomes]
rs9591103	1.00[YRI][hapmap]
rs9591104	1.00[YRI][hapmap]
rs9591105	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9591106	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9591111	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9595765	1.00[AMR][1000 genomes]
rs9595777	1.00[YRI][hapmap]
rs9595778	1.00[YRI][hapmap]
rs9595780	0.89[AFR][1000 genomes]
rs9595781	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9595782	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9595788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832600	chr13:48183118-48341417	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv561589	chr13:48251736-48420218	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv437785	chr13:48329584-48333991	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48332400-48332600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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