Variant report

Variant	rs9591105
Chromosome Location	chr13:48348021-48348022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10162028	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13378665	1.00[AMR][1000 genomes]
rs1998658	0.83[AMR][1000 genomes]
rs7319088	1.00[AMR][1000 genomes]
rs73477178	0.83[AMR][1000 genomes]
rs73483215	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74073524	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7994989	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9316333	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9591095	0.83[AMR][1000 genomes]
rs9591106	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9591111	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9595765	1.00[AMR][1000 genomes]
rs9595780	0.90[AFR][1000 genomes]
rs9595781	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9595782	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9595788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv561589	chr13:48251736-48420218	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48347000-48348200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:48347000-48348400	Enhancers	H9 Cell Line	embryonic stem cell
3	chr13:48347200-48348200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:48347200-48348400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr13:48347400-48349800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:48347600-48348400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr13:48347600-48348400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr13:48347600-48348800	Enhancers	Hela-S3	cervix
9	chr13:48347800-48348200	Enhancers	Fetal Muscle Trunk	muscle
10	chr13:48347800-48348400	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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