Variant report

Variant	rs1998658
Chromosome Location	chr13:48285947-48285948
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10162028	0.83[AMR][1000 genomes]
rs13378665	0.83[AMR][1000 genomes]
rs7319088	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73477178	1.00[AMR][1000 genomes]
rs73483215	0.83[AMR][1000 genomes]
rs74073524	0.83[AMR][1000 genomes]
rs7994989	0.83[AMR][1000 genomes]
rs9316333	0.83[AMR][1000 genomes]
rs9591095	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9591105	0.83[AMR][1000 genomes]
rs9591106	0.83[AMR][1000 genomes]
rs9591111	0.83[AMR][1000 genomes]
rs9595765	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9595766	0.85[AMR][1000 genomes]
rs9595781	0.83[AMR][1000 genomes]
rs9595782	0.83[AMR][1000 genomes]
rs9595788	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832600	chr13:48183118-48341417	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900066	chr13:48234112-48292845	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv561589	chr13:48251736-48420218	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1047818	chr13:48264618-48327155	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	nsv1052701	chr13:48273757-48326134	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
8	esv3371516	chr13:48285051-48289349	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48283800-48287000	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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