Variant report
| Variant | rs9595788 |
|---|---|
| Chromosome Location | chr13:48373582-48373583 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:48372840..48373623-chr13:48512914..48513683,3 | MCF-7 | breast: | |
| 2 | chr13:48373223..48373750-chr13:48512933..48513507,2 | MCF-7 | breast: | |
| 3 | chr13:48373135..48373727-chr13:48561238..48561832,3 | MCF-7 | breast: | |
| 4 | chr13:48371410..48374198-chr13:48468261..48469829,2 | MCF-7 | breast: | |
| 5 | chr13:48373048..48373868-chr13:48611844..48612676,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000136143 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10162028 | 1.00[AMR][1000 genomes] |
| rs13378665 | 1.00[AMR][1000 genomes] |
| rs1998658 | 0.83[AMR][1000 genomes] |
| rs2209381 | 0.89[AFR][1000 genomes] |
| rs7319088 | 1.00[AMR][1000 genomes] |
| rs73477178 | 0.83[AMR][1000 genomes] |
| rs73483215 | 1.00[AMR][1000 genomes] |
| rs73483250 | 0.94[AFR][1000 genomes] |
| rs74073524 | 1.00[AMR][1000 genomes] |
| rs7994989 | 1.00[AMR][1000 genomes] |
| rs9316333 | 1.00[AMR][1000 genomes] |
| rs9591095 | 0.83[AMR][1000 genomes] |
| rs9591105 | 1.00[AMR][1000 genomes] |
| rs9591106 | 1.00[AMR][1000 genomes] |
| rs9591111 | 1.00[AMR][1000 genomes] |
| rs9591113 | 0.84[AFR][1000 genomes] |
| rs9595765 | 1.00[AMR][1000 genomes] |
| rs9595781 | 1.00[AMR][1000 genomes] |
| rs9595782 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3510679 | chr13:48236624-48498185 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv3510680 | chr13:48236624-48498185 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv561589 | chr13:48251736-48420218 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv561590 | chr13:48350699-48399027 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:48366000-48375800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
