Variant report

Variant	rs13378665
Chromosome Location	chr13:48356085-48356086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10162028	1.00[AMR][1000 genomes]
rs1998658	0.83[AMR][1000 genomes]
rs7319088	1.00[AMR][1000 genomes]
rs73477178	0.83[AMR][1000 genomes]
rs73483215	1.00[AMR][1000 genomes]
rs74073524	1.00[AMR][1000 genomes]
rs7994989	1.00[AMR][1000 genomes]
rs9316333	1.00[AMR][1000 genomes]
rs9591095	0.83[AMR][1000 genomes]
rs9591105	1.00[AMR][1000 genomes]
rs9591106	1.00[AMR][1000 genomes]
rs9591111	1.00[AMR][1000 genomes]
rs9595765	1.00[AMR][1000 genomes]
rs9595781	1.00[AMR][1000 genomes]
rs9595782	1.00[AMR][1000 genomes]
rs9595788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv561589	chr13:48251736-48420218	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv561590	chr13:48350699-48399027	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48356000-48356400	Active TSS	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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