Variant report
| Variant | rs9595778 |
|---|---|
| Chromosome Location | chr13:48341554-48341555 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10162028 | 1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13378665 | 1.00[AMR][1000 genomes] |
| rs1998658 | 0.83[AMR][1000 genomes] |
| rs7319088 | 1.00[AMR][1000 genomes] |
| rs73477178 | 0.83[AMR][1000 genomes] |
| rs73483215 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74073524 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7994989 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9316333 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9591095 | 0.83[AMR][1000 genomes] |
| rs9591103 | 1.00[YRI][hapmap] |
| rs9591104 | 1.00[YRI][hapmap] |
| rs9591105 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9591106 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9591111 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9595765 | 1.00[AMR][1000 genomes] |
| rs9595777 | 1.00[YRI][hapmap] |
| rs9595780 | 0.90[AFR][1000 genomes] |
| rs9595781 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9595782 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9595788 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3510679 | chr13:48236624-48498185 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv3510680 | chr13:48236624-48498185 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv561589 | chr13:48251736-48420218 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9595778 | LPAR6 | cis | lymphoblastoid | seeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
