Variant report

Variant	rs9595875
Chromosome Location	chr13:48801859-48801860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1002865	0.94[ASN][1000 genomes]
rs11556899	0.94[ASN][1000 genomes]
rs34692420	0.94[ASN][1000 genomes]
rs56955865	0.87[ASN][1000 genomes]
rs60372626	0.87[ASN][1000 genomes]
rs73485077	0.94[ASN][1000 genomes]
rs73485079	0.87[ASN][1000 genomes]
rs7993670	0.94[ASN][1000 genomes]
rs7996717	0.94[ASN][1000 genomes]
rs7999809	0.87[ASN][1000 genomes]
rs8002352	0.94[ASN][1000 genomes]
rs8002765	0.94[ASN][1000 genomes]
rs9332246	0.94[ASN][1000 genomes]
rs9332285	0.87[ASN][1000 genomes]
rs9332304	0.94[ASN][1000 genomes]
rs9595874	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1043294	chr13:48762477-48810028	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48796000-48806800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:48797200-48806200	Weak transcription	Ovary	ovary
3	chr13:48797400-48803600	Weak transcription	Fetal Intestine Large	intestine
4	chr13:48797400-48804400	Weak transcription	Fetal Intestine Small	intestine
5	chr13:48797400-48806200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr13:48797800-48806200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:48799200-48804800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr13:48799200-48804800	Weak transcription	Fetal Kidney	kidney
9	chr13:48799400-48805600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr13:48799600-48804400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr13:48799600-48804800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:48799600-48805000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr13:48801400-48805000	Enhancers	HepG2	liver
14	chr13:48801800-48802600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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