Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1002865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11556899	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3092888	1.00[CEU][hapmap]
rs34692420	0.94[ASN][1000 genomes]
rs4151434	1.00[CEU][hapmap]
rs4151442	1.00[CEU][hapmap]
rs4151448	1.00[CEU][hapmap]
rs4151452	1.00[CEU][hapmap]
rs4151456	1.00[CEU][hapmap]
rs4151474	1.00[CEU][hapmap]
rs4151525	1.00[CEU][hapmap]
rs56955865	0.87[ASN][1000 genomes]
rs60372626	0.87[ASN][1000 genomes]
rs73485077	0.94[ASN][1000 genomes]
rs73485079	0.87[ASN][1000 genomes]
rs7993670	0.94[ASN][1000 genomes]
rs7996717	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs7999809	0.87[ASN][1000 genomes]
rs8002352	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs8002765	0.94[ASN][1000 genomes]
rs9332246	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9332278	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9332285	0.87[ASN][1000 genomes]
rs9332304	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs9595875	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1043294	chr13:48762477-48810028	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48796000-48806800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:48797200-48801800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr13:48797200-48806200	Weak transcription	Ovary	ovary
4	chr13:48797400-48803600	Weak transcription	Fetal Intestine Large	intestine
5	chr13:48797400-48804400	Weak transcription	Fetal Intestine Small	intestine
6	chr13:48797400-48806200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr13:48797800-48806200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr13:48799200-48804800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr13:48799200-48804800	Weak transcription	Fetal Kidney	kidney
10	chr13:48799400-48801400	Weak transcription	HepG2	liver
11	chr13:48799400-48805600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr13:48799600-48804400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr13:48799600-48804800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr13:48799600-48805000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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