Variant report

Variant	rs9635349
Chromosome Location	chr15:58298404-58298405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10518955	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11071358	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11071359	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11071360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11635954	0.97[EUR][1000 genomes]
rs12595564	0.97[EUR][1000 genomes]
rs12903093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12910509	0.97[EUR][1000 genomes]
rs1441816	0.97[EUR][1000 genomes]
rs1441817	0.83[EUR][1000 genomes]
rs1822206	0.88[AMR][1000 genomes]
rs1837852	0.94[EUR][1000 genomes]
rs1837853	0.97[EUR][1000 genomes]
rs1837855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1899354	0.97[EUR][1000 genomes]
rs1964429	0.83[EUR][1000 genomes]
rs2012147	0.83[EUR][1000 genomes]
rs2165572	0.94[EUR][1000 genomes]
rs2197093	0.97[EUR][1000 genomes]
rs2218261	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2642616	0.91[EUR][1000 genomes]
rs2704195	0.82[EUR][1000 genomes]
rs2704219	0.91[EUR][1000 genomes]
rs2704220	0.91[EUR][1000 genomes]
rs2899609	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35648920	0.94[EUR][1000 genomes]
rs36018359	0.94[EUR][1000 genomes]
rs36071236	0.94[EUR][1000 genomes]
rs4775008	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6493972	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6493973	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7176918	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8028082	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs8029975	0.96[AFR][1000 genomes]
rs8041922	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9635347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9635348	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv904261	chr15:58258424-58347260	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58285400-58301400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr15:58289800-58299000	Weak transcription	Fetal Lung	lung
3	chr15:58292400-58306000	Strong transcription	K562	blood
4	chr15:58297400-58303000	Strong transcription	Fetal Kidney	kidney

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