Variant report

Variant	rs2704220
Chromosome Location	chr15:58328472-58328473
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10518955	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11071358	0.80[EUR][1000 genomes]
rs11071359	0.94[EUR][1000 genomes]
rs11071360	0.94[EUR][1000 genomes]
rs11635954	0.94[EUR][1000 genomes]
rs12595564	0.94[EUR][1000 genomes]
rs12903093	0.94[EUR][1000 genomes]
rs12910509	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1441816	0.94[EUR][1000 genomes]
rs1441817	0.80[EUR][1000 genomes]
rs1822206	0.87[AMR][1000 genomes]
rs1837852	0.90[EUR][1000 genomes]
rs1837853	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1837855	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1899354	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1964429	0.80[EUR][1000 genomes]
rs2012147	0.80[EUR][1000 genomes]
rs2165572	0.90[EUR][1000 genomes]
rs2197093	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2218261	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2642616	1.00[EUR][1000 genomes]
rs2704195	0.85[EUR][1000 genomes]
rs2704219	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2899609	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34907369	0.87[EUR][1000 genomes]
rs35343865	0.87[EUR][1000 genomes]
rs35648920	0.90[EUR][1000 genomes]
rs36018359	0.90[EUR][1000 genomes]
rs36071236	0.90[EUR][1000 genomes]
rs4775008	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6493972	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6493973	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7176918	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8028082	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs8041922	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9635347	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9635348	0.94[EUR][1000 genomes]
rs9635349	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904261	chr15:58258424-58347260	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58325400-58329200	Weak transcription	K562	blood
2	chr15:58327200-58330400	Weak transcription	HMEC	breast
3	chr15:58327400-58330600	Weak transcription	NHEK	skin
4	chr15:58327400-58331000	Weak transcription	Psoas Muscle	Psoas
5	chr15:58328400-58332800	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links