Variant report

Variant	rs4775008
Chromosome Location	chr15:58286660-58286661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10518955	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11071358	0.86[EUR][1000 genomes]
rs11071359	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11071360	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11635954	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12595564	1.00[EUR][1000 genomes]
rs12903093	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12910509	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1441816	1.00[EUR][1000 genomes]
rs1441817	0.86[EUR][1000 genomes]
rs1822206	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1837852	0.97[EUR][1000 genomes]
rs1837853	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1837855	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1899354	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1964429	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs2012147	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs2165572	0.97[EUR][1000 genomes]
rs2197093	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2218261	1.00[CEU][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2464470	0.82[CEU][hapmap]
rs2642616	0.94[EUR][1000 genomes]
rs2704195	0.85[EUR][1000 genomes]
rs2704211	0.82[CEU][hapmap]
rs2704212	0.82[CEU][hapmap]
rs2704219	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2704220	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2899609	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34907369	0.81[EUR][1000 genomes]
rs35343865	0.81[EUR][1000 genomes]
rs35648920	0.97[EUR][1000 genomes]
rs36018359	0.97[EUR][1000 genomes]
rs36071236	0.97[EUR][1000 genomes]
rs6493972	1.00[CEU][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6493973	1.00[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7176918	1.00[CEU][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8028082	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8041922	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9635347	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9635348	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9635349	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv904261	chr15:58258424-58347260	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58262600-58287800	Weak transcription	Fetal Muscle Leg	muscle
2	chr15:58283600-58289000	Strong transcription	K562	blood
3	chr15:58284400-58288600	Enhancers	Fetal Lung	lung
4	chr15:58284600-58287000	Genic enhancers	Fetal Kidney	kidney
5	chr15:58284800-58287400	Enhancers	Fetal Stomach	stomach
6	chr15:58284800-58287400	Enhancers	Ovary	ovary
7	chr15:58285400-58301400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr15:58286200-58287200	Enhancers	Colon Smooth Muscle	Colon
9	chr15:58286400-58286800	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr15:58286400-58287400	Enhancers	HUVEC	blood vessel
11	chr15:58286600-58286800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:58286600-58286800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:58286600-58287600	Enhancers	Pancreatic Islets	Pancreatic Islet

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