Variant report

Variant	rs34907369
Chromosome Location	chr15:58347708-58347709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58347698..58349287-chr15:58357341..58359219,2	MCF-7	breast:
2	chr15:58335508..58337087-chr15:58346806..58348400,2	K562	blood:
3	chr15:58346910..58349954-chr15:58473390..58475572,3	K562	blood:
4	chr15:58337253..58339004-chr15:58345727..58347852,2	K562	blood:
5	chr15:58330591..58332432-chr15:58347287..58349860,2	K562	blood:

Variant related genes	Relation type
ENSG00000128918	Chromatin interaction
ENSG00000259285	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10518955	0.81[EUR][1000 genomes]
rs11071359	0.81[EUR][1000 genomes]
rs11071360	0.81[EUR][1000 genomes]
rs11635954	0.81[EUR][1000 genomes]
rs12595564	0.81[EUR][1000 genomes]
rs12903093	0.81[EUR][1000 genomes]
rs12910509	0.81[EUR][1000 genomes]
rs1441816	0.81[EUR][1000 genomes]
rs1837853	0.81[EUR][1000 genomes]
rs1837855	0.81[EUR][1000 genomes]
rs1899354	0.81[EUR][1000 genomes]
rs2197093	0.81[EUR][1000 genomes]
rs2218261	0.81[EUR][1000 genomes]
rs2464471	0.85[EUR][1000 genomes]
rs2642616	0.87[EUR][1000 genomes]
rs2642637	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2642645	0.85[EUR][1000 genomes]
rs2704195	0.87[AMR][1000 genomes]
rs2704219	0.87[EUR][1000 genomes]
rs2704220	0.87[EUR][1000 genomes]
rs2899609	0.81[EUR][1000 genomes]
rs35343865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35648920	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36018359	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36071236	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4775008	0.81[EUR][1000 genomes]
rs6493972	0.81[EUR][1000 genomes]
rs6493973	0.81[EUR][1000 genomes]
rs7176918	0.81[EUR][1000 genomes]
rs8028082	0.81[EUR][1000 genomes]
rs8041922	0.81[EUR][1000 genomes]
rs9635347	0.81[EUR][1000 genomes]
rs9635348	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904262	chr15:58340072-58355798	Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv569595	chr15:58343146-58353335	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58344200-58349000	Weak transcription	K562	blood
2	chr15:58347200-58350200	Weak transcription	Fetal Kidney	kidney

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