Variant report
| Variant | rs2642637 |
|---|---|
| Chromosome Location | chr15:58364104-58364105 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:58362436..58364377-chr15:58373826..58376648,2 | K562 | blood: |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-AQP9-1 | chr15:58364020-58364902 | ENSG00000245722 |
| 2 | lnc-AQP9-1 | chr15:58364020-58364903 | NONHSAT044091 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10518955 | 1.00[CEU][hapmap] |
| rs12910509 | 1.00[CEU][hapmap];1.00[GIH][hapmap] |
| rs1441816 | 0.89[AMR][1000 genomes] |
| rs1837852 | 0.89[AMR][1000 genomes] |
| rs1837853 | 1.00[CEU][hapmap];1.00[GIH][hapmap] |
| rs1837855 | 1.00[CEU][hapmap] |
| rs1899354 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes] |
| rs2197093 | 1.00[CEU][hapmap] |
| rs2218261 | 1.00[CEU][hapmap];1.00[GIH][hapmap] |
| rs2464471 | 1.00[EUR][1000 genomes] |
| rs2642616 | 0.89[AMR][1000 genomes] |
| rs2642623 | 0.82[EUR][1000 genomes] |
| rs2642645 | 1.00[EUR][1000 genomes] |
| rs2704195 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2704219 | 1.00[CEU][hapmap] |
| rs2704220 | 1.00[CEU][hapmap] |
| rs34907369 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs35343865 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs35648920 | 0.87[AMR][1000 genomes] |
| rs36018359 | 0.87[AMR][1000 genomes] |
| rs36071236 | 0.87[AMR][1000 genomes] |
| rs4775008 | 1.00[CEU][hapmap] |
| rs6493972 | 1.00[CEU][hapmap];1.00[GIH][hapmap] |
| rs6493973 | 1.00[CEU][hapmap];1.00[GIH][hapmap] |
| rs7176918 | 1.00[CEU][hapmap] |
| rs8028082 | 1.00[CEU][hapmap] |
| rs8041922 | 1.00[CEU][hapmap] |
| rs9635347 | 1.00[CEU][hapmap];1.00[GIH][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1038667 | chr15:57933076-58481870 | Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv542400 | chr15:57933076-58481870 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv904263 | chr15:58340072-58437346 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv569596 | chr15:58355798-58408763 | Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
