Variant report

Variant	rs2704195
Chromosome Location	chr15:58364372-58364373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10518955	0.85[EUR][1000 genomes]
rs11071359	0.85[EUR][1000 genomes]
rs11071360	0.85[EUR][1000 genomes]
rs11635954	0.85[EUR][1000 genomes]
rs12595564	0.85[EUR][1000 genomes]
rs12903093	0.85[EUR][1000 genomes]
rs12910509	0.85[EUR][1000 genomes]
rs1441816	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1837852	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1837853	0.85[EUR][1000 genomes]
rs1837855	0.85[EUR][1000 genomes]
rs1899354	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2165572	0.81[EUR][1000 genomes]
rs2197093	0.85[EUR][1000 genomes]
rs2218261	0.85[EUR][1000 genomes]
rs2464468	0.85[AFR][1000 genomes]
rs2464471	0.94[EUR][1000 genomes]
rs2642616	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2642637	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2642645	0.94[EUR][1000 genomes]
rs2704219	0.85[EUR][1000 genomes]
rs2704220	0.85[EUR][1000 genomes]
rs2899609	0.85[EUR][1000 genomes]
rs34907369	0.87[AMR][1000 genomes]
rs35343865	0.87[AMR][1000 genomes]
rs35648920	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs36018359	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs36071236	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4775008	0.85[EUR][1000 genomes]
rs6493972	0.85[EUR][1000 genomes]
rs6493973	0.85[EUR][1000 genomes]
rs7176918	0.85[EUR][1000 genomes]
rs8028082	0.85[EUR][1000 genomes]
rs8041922	0.85[EUR][1000 genomes]
rs9635347	0.85[EUR][1000 genomes]
rs9635348	0.85[EUR][1000 genomes]
rs9635349	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv569596	chr15:58355798-58408763	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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