Variant report

Variant	rs1837853
Chromosome Location	chr15:58263181-58263182
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58256067..58257569-chr15:58262766..58264756,2	K562	blood:
2	chr15:58251581..58253908-chr15:58262136..58263877,2	K562	blood:
3	chr15:58260254..58263226-chr15:58263672..58265753,2	MCF-7	breast:
4	chr15:58258528..58260407-chr15:58261970..58264281,2	K562	blood:
5	chr15:58260833..58263956-chr15:58356414..58359716,3	K562	blood:
6	chr15:58261234..58263951-chr15:58334442..58336096,2	K562	blood:

Variant related genes	Relation type
ENSG00000259285	Chromatin interaction
ENSG00000128918	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10518955	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11071358	0.86[EUR][1000 genomes]
rs11071359	1.00[EUR][1000 genomes]
rs11071360	1.00[EUR][1000 genomes]
rs11635954	1.00[EUR][1000 genomes]
rs12595564	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12903093	1.00[EUR][1000 genomes]
rs12910509	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1441816	1.00[EUR][1000 genomes]
rs1441817	0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs1822206	0.81[EUR][1000 genomes]
rs1837852	0.97[EUR][1000 genomes]
rs1837855	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1899354	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1964429	0.86[EUR][1000 genomes]
rs2012147	0.86[EUR][1000 genomes]
rs2165572	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2197093	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2218261	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs2642616	0.94[EUR][1000 genomes]
rs2704195	0.85[EUR][1000 genomes]
rs2704219	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2704220	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2899609	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34907369	0.81[EUR][1000 genomes]
rs35343865	0.81[EUR][1000 genomes]
rs35648920	0.97[EUR][1000 genomes]
rs36018359	0.97[EUR][1000 genomes]
rs36071236	0.97[EUR][1000 genomes]
rs4775008	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6493972	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs6493973	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7176918	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8028082	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8041922	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9635347	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9635348	1.00[EUR][1000 genomes]
rs9635349	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv904256	chr15:58253269-58274229	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv904257	chr15:58253894-58281035	Bivalent Enhancer Enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv904258	chr15:58255305-58281035	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv904259	chr15:58256296-58274229	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv904260	chr15:58257123-58276747	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv904261	chr15:58258424-58347260	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58253800-58271600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr15:58253800-58284800	Weak transcription	Ovary	ovary
3	chr15:58258000-58272200	Weak transcription	Right Ventricle	heart
4	chr15:58259000-58264600	Weak transcription	Fetal Lung	lung
5	chr15:58260400-58272000	Weak transcription	Fetal Kidney	kidney
6	chr15:58262600-58287800	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:58262800-58272000	Weak transcription	K562	blood

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