Variant report

Variant	rs9642866
Chromosome Location	chr8:124568530-124568531
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10505433	0.86[EUR][1000 genomes]
rs12541091	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12545624	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12549584	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16898561	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16898563	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16898583	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16898590	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56804846	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60114686	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7006769	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7018353	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs953396	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124558800-124571400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:124565400-124569800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:124565800-124569600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:124565800-124569600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:124566000-124570000	Weak transcription	HMEC	breast
6	chr8:124567400-124570000	Weak transcription	NHEK	skin
7	chr8:124568000-124568600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:124568200-124568600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:124568200-124568600	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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