Variant report

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:124466204..124466710-chr8:124575524..124576463,2	MCF-7	breast:
2	chr8:124575822..124576635-chr8:125476420..125477334,2	MCF-7	breast:
3	chr8:124574966..124577834-chr8:124674515..124676204,2	MCF-7	breast:
4	chr8:124551947..124555089-chr8:124574852..124578718,4	MCF-7	breast:
5	chr8:124427734..124430376-chr8:124575604..124577355,2	MCF-7	breast:
6	chr8:124575271..124580118-chr8:124587417..124591995,7	MCF-7	breast:
7	chr8:124574833..124579835-chr8:124581420..124586695,7	MCF-7	breast:
8	chr8:124575550..124576439-chr8:124638158..124638909,2	MCF-7	breast:
9	chr8:124498365..124499355-chr8:124575418..124576285,3	MCF-7	breast:
10	chr8:124540299..124544028-chr8:124575261..124578367,3	MCF-7	breast:
11	chr8:124548751..124555755-chr8:124572914..124580106,12	MCF-7	breast:
12	chr8:124572458..124577349-chr8:124702422..124707183,6	MCF-7	breast:
13	chr8:124574004..124576603-chr8:124675208..124677787,2	MCF-7	breast:
14	chr8:124575452..124576205-chr8:124628574..124629465,2	MCF-7	breast:
15	chr8:124575528..124576396-chr8:124638141..124638658,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10505433	0.83[EUR][1000 genomes]
rs12541091	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12545624	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12549584	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16898561	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16898583	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16898590	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16898594	0.89[EUR][1000 genomes]
rs16898607	0.89[EUR][1000 genomes]
rs16898612	0.89[EUR][1000 genomes]
rs16898613	0.89[EUR][1000 genomes]
rs16898624	0.89[EUR][1000 genomes]
rs56804846	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58536265	0.88[EUR][1000 genomes]
rs59498777	0.88[EUR][1000 genomes]
rs59621056	0.88[EUR][1000 genomes]
rs60114686	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7006769	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7018353	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73335873	0.88[EUR][1000 genomes]
rs9642866	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124575600-124576000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:124575600-124578200	Enhancers	Placenta	Placenta
3	chr8:124575600-124598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:124575800-124576000	Weak transcription	HMEC	breast
5	chr8:124575800-124576200	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr8:124575800-124577000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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