Variant report

Variant	rs16898594
Chromosome Location	chr8:124591674-124591675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124575271..124580118-chr8:124587417..124591995,7	MCF-7	breast:
2	chr8:124576148..124579059-chr8:124591482..124593021,2	MCF-7	breast:
3	chr8:124589966..124594613-chr8:124606326..124610133,5	MCF-7	breast:
4	chr8:124591472..124593907-chr8:124596529..124599826,4	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10091537	0.89[ASN][1000 genomes]
rs12541091	0.89[EUR][1000 genomes]
rs12545624	0.87[CEU][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs12549584	0.81[EUR][1000 genomes]
rs16898561	0.81[EUR][1000 genomes]
rs16898563	0.89[EUR][1000 genomes]
rs16898583	0.87[CEU][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs16898590	0.87[CEU][hapmap];0.90[GIH][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes]
rs16898607	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898624	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56804846	0.89[EUR][1000 genomes]
rs58536265	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58847541	1.00[ASN][1000 genomes]
rs59498777	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59621056	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60114686	0.89[EUR][1000 genomes]
rs62520910	0.94[ASN][1000 genomes]
rs7006769	0.89[EUR][1000 genomes]
rs7018353	0.89[EUR][1000 genomes]
rs73335873	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16898594	SIRPG	trans	lymphoblastoid	seeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124575600-124598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:124587400-124592000	Weak transcription	HSMM	muscle
3	chr8:124587400-124592200	Weak transcription	Placenta	Placenta
4	chr8:124588400-124592800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:124588800-124592200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:124589600-124593600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:124590000-124592400	Weak transcription	Fetal Intestine Large	intestine
8	chr8:124590200-124591800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:124590800-124592000	Weak transcription	HMEC	breast
10	chr8:124590800-124593000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:124590800-124597000	Weak transcription	HSMMtube	muscle
12	chr8:124591000-124591800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr8:124591000-124594600	Enhancers	Fetal Intestine Small	intestine
14	chr8:124591600-124591800	Enhancers	Fetal Muscle Leg	muscle
15	chr8:124591600-124592000	Enhancers	Brain Hippocampus Middle	brain
16	chr8:124591600-124592000	Enhancers	Psoas Muscle	Psoas
17	chr8:124591600-124592400	Enhancers	Pancreas	Pancrea
18	chr8:124591600-124593000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:124591600-124593000	Enhancers	NHDF-Ad	bronchial
20	chr8:124591600-124593800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr8:124591600-124594000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:124591600-124594000	Enhancers	Fetal Heart	heart
23	chr8:124591600-124594200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr8:124591600-124594400	Enhancers	Skeletal Muscle Male	skeletal muscle

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