Variant report

Variant	rs16898607
Chromosome Location	chr8:124593695-124593696
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124589966..124594613-chr8:124606326..124610133,5	MCF-7	breast:
2	chr8:124591963..124593742-chr8:124625579..124627436,2	MCF-7	breast:
3	chr8:124591472..124593907-chr8:124596529..124599826,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253286	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10091537	0.89[ASN][1000 genomes]
rs12541091	0.89[EUR][1000 genomes]
rs12545624	0.89[EUR][1000 genomes]
rs12549584	0.81[EUR][1000 genomes]
rs16898561	0.81[EUR][1000 genomes]
rs16898563	0.89[EUR][1000 genomes]
rs16898583	0.89[EUR][1000 genomes]
rs16898590	0.91[EUR][1000 genomes]
rs16898594	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898612	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898613	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56804846	0.89[EUR][1000 genomes]
rs58536265	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58847541	1.00[ASN][1000 genomes]
rs59498777	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59621056	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60114686	0.89[EUR][1000 genomes]
rs62520910	0.94[ASN][1000 genomes]
rs7006769	0.89[EUR][1000 genomes]
rs7018353	0.89[EUR][1000 genomes]
rs73335873	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124575600-124598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:124590800-124597000	Weak transcription	HSMMtube	muscle
3	chr8:124591000-124594600	Enhancers	Fetal Intestine Small	intestine
4	chr8:124591600-124593800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:124591600-124594000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:124591600-124594000	Enhancers	Fetal Heart	heart
7	chr8:124591600-124594200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr8:124591600-124594400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr8:124591800-124593800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:124591800-124594200	Enhancers	Osteobl	bone
11	chr8:124592200-124594000	Enhancers	Duodenum Mucosa	Duodenum
12	chr8:124592200-124594000	Enhancers	HepG2	liver
13	chr8:124592400-124594000	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr8:124592400-124594400	Enhancers	Fetal Intestine Large	intestine
15	chr8:124592800-124593800	Enhancers	Aorta	Aorta
16	chr8:124592800-124594200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr8:124592800-124596200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:124593000-124595800	Weak transcription	HMEC	breast
19	chr8:124593200-124594000	Enhancers	Pancreas	Pancrea
20	chr8:124593200-124594000	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr8:124593200-124594400	Enhancers	Psoas Muscle	Psoas
22	chr8:124593400-124593800	Enhancers	Left Ventricle	heart
23	chr8:124593400-124594000	Enhancers	Fetal Muscle Leg	muscle
24	chr8:124593400-124594000	Enhancers	HUVEC	blood vessel
25	chr8:124593600-124593800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr8:124593600-124593800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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