Variant report

Variant	rs16898624
Chromosome Location	chr8:124601054-124601055
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDYHV1-3	chr8:124600999-124601286	NONHSAT128560

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10091537	0.89[ASN][1000 genomes]
rs12541091	0.89[EUR][1000 genomes]
rs12545624	0.89[EUR][1000 genomes]
rs12549584	0.81[EUR][1000 genomes]
rs16898561	0.81[EUR][1000 genomes]
rs16898563	0.89[EUR][1000 genomes]
rs16898583	0.89[EUR][1000 genomes]
rs16898590	0.91[EUR][1000 genomes]
rs16898594	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898612	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898613	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56804846	0.89[EUR][1000 genomes]
rs58536265	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58847541	1.00[ASN][1000 genomes]
rs59498777	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59621056	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60114686	0.89[EUR][1000 genomes]
rs62520910	0.94[ASN][1000 genomes]
rs7006769	0.89[EUR][1000 genomes]
rs7018353	0.89[EUR][1000 genomes]
rs73335873	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124598400-124602200	Weak transcription	Fetal Muscle Leg	muscle
2	chr8:124598600-124601400	Enhancers	Aorta	Aorta
3	chr8:124598800-124601400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:124599000-124602000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:124599200-124601400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:124599200-124601400	Weak transcription	NHDF-Ad	bronchial
7	chr8:124599200-124602400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr8:124599200-124604400	Weak transcription	HSMMtube	muscle
9	chr8:124599400-124601200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:124599400-124601200	Weak transcription	HMEC	breast
11	chr8:124599400-124601200	Weak transcription	NH-A	brain
12	chr8:124599400-124601400	Weak transcription	Osteobl	bone
13	chr8:124599400-124604400	Weak transcription	HSMM	muscle
14	chr8:124599400-124604600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:124599400-124604800	Enhancers	Stomach Smooth Muscle	stomach
16	chr8:124599400-124605000	Enhancers	Colon Smooth Muscle	Colon
17	chr8:124599600-124601800	Enhancers	Pancreas	Pancrea
18	chr8:124599600-124606200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr8:124600200-124602400	Enhancers	Right Atrium	heart
20	chr8:124600400-124602000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr8:124600400-124602200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr8:124600400-124602200	Weak transcription	Left Ventricle	heart
23	chr8:124600400-124604400	Weak transcription	Psoas Muscle	Psoas
24	chr8:124600400-124604600	Weak transcription	Adipose Nuclei	Adipose
25	chr8:124600600-124602000	Weak transcription	Fetal Heart	heart
26	chr8:124600600-124602400	Enhancers	Right Ventricle	heart
27	chr8:124600800-124601200	Weak transcription	NHLF	lung
28	chr8:124600800-124602200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr8:124601000-124601200	Bivalent Enhancer	K562	blood
30	chr8:124601000-124602800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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