Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124575939..124579271-chr8:124581722..124584580,4	MCF-7	breast:
2	chr8:124574833..124579835-chr8:124581420..124586695,7	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10505433	0.83[EUR][1000 genomes]
rs12541091	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12545624	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[GIH][hapmap];0.93[LWK][hapmap];0.86[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12549584	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16898561	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16898563	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16898590	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16898594	0.89[EUR][1000 genomes]
rs16898607	0.89[EUR][1000 genomes]
rs16898612	0.87[CEU][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs16898613	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs16898624	0.89[EUR][1000 genomes]
rs56804846	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58536265	0.88[EUR][1000 genomes]
rs59498777	0.88[EUR][1000 genomes]
rs59621056	0.88[EUR][1000 genomes]
rs60114686	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006769	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7018353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73335873	0.88[EUR][1000 genomes]
rs9642866	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124575600-124598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:124581400-124584600	Weak transcription	Placenta	Placenta
3	chr8:124581400-124584800	Weak transcription	Esophagus	oesophagus
4	chr8:124581400-124585000	Weak transcription	Adipose Nuclei	Adipose
5	chr8:124581600-124586400	Weak transcription	Fetal Heart	heart
6	chr8:124582400-124585800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:124582600-124588400	Enhancers	Fetal Muscle Leg	muscle
8	chr8:124582600-124588400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr8:124582800-124584800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:124583200-124584200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr8:124583200-124588000	Enhancers	Psoas Muscle	Psoas
12	chr8:124583400-124586400	Weak transcription	HSMMtube	muscle
13	chr8:124583800-124584400	Enhancers	Right Atrium	heart

Quick Search: