Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr8:124598354-124598879	K562	blood:	n/a	n/a
2	RAD21	chr8:124598142-124598872	IMR90	lung:	n/a	n/a
3	TCF12	chr8:124598501-124599030	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr8:124596927..124598832-chr8:124603529..124605286,2	MCF-7	breast:
2	chr8:124597117..124599176-chr8:124606571..124610166,3	MCF-7	breast:
3	chr8:124591472..124593907-chr8:124596529..124599826,4	MCF-7	breast:

Variant related genes	Relation type
RN7SKP155	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10091537	0.89[ASN][1000 genomes]
rs12541091	0.89[EUR][1000 genomes]
rs12545624	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs12549584	0.81[EUR][1000 genomes]
rs16898561	0.81[EUR][1000 genomes]
rs16898563	0.89[EUR][1000 genomes]
rs16898583	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs16898590	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs16898594	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898607	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898624	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56804846	0.89[EUR][1000 genomes]
rs58536265	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58847541	1.00[ASN][1000 genomes]
rs59498777	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59621056	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60114686	0.89[EUR][1000 genomes]
rs62520910	0.94[ASN][1000 genomes]
rs7006769	0.89[EUR][1000 genomes]
rs7018353	0.89[EUR][1000 genomes]
rs73335873	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124597400-124599800	Weak transcription	Fetal Heart	heart
2	chr8:124597800-124599400	Enhancers	Osteobl	bone
3	chr8:124598000-124599400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:124598000-124599400	Enhancers	NH-A	brain
5	chr8:124598200-124599400	Enhancers	HMEC	breast
6	chr8:124598400-124599400	Enhancers	HSMM	muscle
7	chr8:124598400-124602200	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:124598600-124599000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:124598600-124599200	Enhancers	HSMMtube	muscle
10	chr8:124598600-124599200	Enhancers	NHDF-Ad	bronchial
11	chr8:124598600-124599400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:124598600-124601400	Enhancers	Aorta	Aorta
13	chr8:124598800-124599200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:124598800-124601400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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