Variant report

Variant	rs9823641
Chromosome Location	chr3:102200076-102200077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs9290709	1.00[EUR][1000 genomes]
rs9839460	1.00[EUR][1000 genomes]
rs9842246	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9842426	0.84[EUR][1000 genomes]
rs9845587	1.00[EUR][1000 genomes]
rs9845944	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9850698	1.00[EUR][1000 genomes]
rs9853770	0.84[EUR][1000 genomes]
rs9858091	1.00[EUR][1000 genomes]
rs9862178	1.00[EUR][1000 genomes]
rs9867919	1.00[EUR][1000 genomes]
rs9879528	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102194400-102200200	Enhancers	Fetal Lung	lung
2	chr3:102195800-102201600	Weak transcription	Hela-S3	cervix
3	chr3:102197800-102202800	Weak transcription	Fetal Intestine Small	intestine
4	chr3:102198200-102207600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:102199000-102200200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:102199400-102201800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:102199400-102202000	Weak transcription	HMEC	breast
8	chr3:102199400-102202800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:102199600-102205200	Weak transcription	Small Intestine	intestine
10	chr3:102199800-102200200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:102199800-102200200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:102199800-102200200	Enhancers	HSMM	muscle
13	chr3:102199800-102200200	Flanking Active TSS	NHEK	skin
14	chr3:102200000-102200200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:102200000-102200200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:102200000-102200200	Flanking Active TSS	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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