Variant report

Variant	rs9842246
Chromosome Location	chr3:102196827-102196828
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs9290709	0.96[EUR][1000 genomes]
rs9823641	0.96[EUR][1000 genomes]
rs9839460	0.96[EUR][1000 genomes]
rs9842426	0.88[EUR][1000 genomes]
rs9845587	0.96[EUR][1000 genomes]
rs9845944	0.92[EUR][1000 genomes]
rs9850698	0.96[EUR][1000 genomes]
rs9853770	0.88[EUR][1000 genomes]
rs9858091	0.96[EUR][1000 genomes]
rs9862178	0.96[EUR][1000 genomes]
rs9867919	0.96[EUR][1000 genomes]
rs9879528	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102194400-102197000	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr3:102194400-102200200	Enhancers	Fetal Lung	lung
3	chr3:102195200-102197800	Enhancers	Fetal Intestine Small	intestine
4	chr3:102195800-102201600	Weak transcription	Hela-S3	cervix
5	chr3:102196600-102197800	Enhancers	Duodenum Mucosa	Duodenum
6	chr3:102196800-102198400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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