Variant report

Variant	rs9842426
Chromosome Location	chr3:102249365-102249366
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs9290709	0.84[EUR][1000 genomes]
rs9823641	0.84[EUR][1000 genomes]
rs9839460	0.84[EUR][1000 genomes]
rs9842246	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9845587	0.84[EUR][1000 genomes]
rs9845944	0.81[EUR][1000 genomes]
rs9850698	0.84[EUR][1000 genomes]
rs9853770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9858091	0.84[EUR][1000 genomes]
rs9862178	0.84[EUR][1000 genomes]
rs9867919	0.84[EUR][1000 genomes]
rs9879528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv3926	chr3:102213136-102257633	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102244400-102255200	Weak transcription	Stomach Mucosa	stomach
2	chr3:102247600-102249400	Enhancers	Hela-S3	cervix
3	chr3:102248400-102249400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:102248600-102249800	Enhancers	Small Intestine	intestine
5	chr3:102248600-102250200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:102248800-102249600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:102249000-102253000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:102249200-102250400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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