Variant report

Variant	rs9845944
Chromosome Location	chr3:102204683-102204684
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs9290709	0.96[EUR][1000 genomes]
rs9823641	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9839460	0.96[EUR][1000 genomes]
rs9842246	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9842426	0.81[EUR][1000 genomes]
rs9845587	0.96[EUR][1000 genomes]
rs9850698	0.96[EUR][1000 genomes]
rs9853770	0.81[EUR][1000 genomes]
rs9858091	0.96[EUR][1000 genomes]
rs9862178	0.96[EUR][1000 genomes]
rs9867919	0.96[EUR][1000 genomes]
rs9879528	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102198200-102207600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:102199600-102205200	Weak transcription	Small Intestine	intestine
3	chr3:102204200-102204800	Enhancers	Duodenum Mucosa	Duodenum
4	chr3:102204400-102204800	Enhancers	Fetal Intestine Small	intestine
5	chr3:102204600-102205200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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