Variant report
| Variant | rs9976399 |
|---|---|
| Chromosome Location | chr21:16141888-16141889 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr21:16086059..16088824-chr21:16139234..16142033,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| GAPDHP16 | TF binding region |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12053660 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs12053661 | 1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12053685 | 1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12481742 | 1.00[CHB][hapmap] |
| rs13046559 | 0.85[ASN][1000 genomes] |
| rs13050196 | 1.00[CHB][hapmap] |
| rs13052551 | 1.00[CHB][hapmap] |
| rs2011512 | 1.00[CHB][hapmap] |
| rs2026844 | 1.00[CHB][hapmap] |
| rs2094859 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2822924 | 0.91[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs2822928 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs2822929 | 1.00[CHB][hapmap] |
| rs2822930 | 1.00[CHB][hapmap] |
| rs2822932 | 1.00[CHB][hapmap] |
| rs2822934 | 1.00[CHB][hapmap] |
| rs2822950 | 0.84[CHB][hapmap] |
| rs7277958 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs9636851 | 1.00[CHB][hapmap] |
| rs9984950 | 1.00[CHB][hapmap] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
