Variant report

Variant	rs7277958
Chromosome Location	chr21:16144411-16144412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF274	chr21:16144063-16144840	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr21:16131213..16134500-chr21:16143323..16145254,3	MCF-7	breast:
2	chr21:16142635..16145022-chr21:16234825..16237651,2	MCF-7	breast:
3	chr21:16143951..16146224-chr21:16159304..16162772,3	K562	blood:
4	chr21:16142841..16145561-chr21:16145912..16150073,3	K562	blood:

Variant related genes	Relation type
GAPDHP16	TF binding region
ENSG00000225502	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11909551	1.00[CEU][hapmap]
rs12053660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12053661	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12053685	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12481742	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13046559	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13048782	1.00[CEU][hapmap]
rs13048847	1.00[CEU][hapmap]
rs13049498	0.95[EUR][1000 genomes]
rs13050196	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13052074	1.00[CEU][hapmap]
rs13052509	0.86[EUR][1000 genomes]
rs13052551	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1569338	1.00[YRI][hapmap]
rs1882876	0.96[YRI][hapmap]
rs2011512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2026844	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2094859	1.00[ASN][1000 genomes]
rs2103467	1.00[CEU][hapmap]
rs2403837	0.81[YRI][hapmap]
rs2822923	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2822924	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822925	0.95[EUR][1000 genomes]
rs2822927	1.00[CEU][hapmap]
rs2822928	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2822930	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2822932	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2822934	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2822936	1.00[YRI][hapmap]
rs2822941	0.96[YRI][hapmap]
rs2822950	0.84[CHB][hapmap]
rs2822955	0.86[YRI][hapmap]
rs2822959	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs34888833	0.86[EUR][1000 genomes]
rs35076443	0.95[EUR][1000 genomes]
rs4817379	1.00[CEU][hapmap]
rs7277621	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7280544	0.96[YRI][hapmap]
rs7281621	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs8131603	0.96[YRI][hapmap]
rs8132509	1.00[CEU][hapmap]
rs9636851	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9976399	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs9979051	0.96[YRI][hapmap]
rs9984950	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16143400-16146200	Enhancers	K562	blood
2	chr21:16143600-16144800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr21:16143800-16144600	Enhancers	Dnd41	blood
4	chr21:16144000-16144600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr21:16144000-16145200	Enhancers	Primary T cells from cord blood	blood
6	chr21:16144400-16144600	Enhancers	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links