Variant report

Variant	rs2822955
Chromosome Location	chr21:16203972-16203973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16199164..16202875-chr21:16203134..16206995,5	K562	blood:

Variant related genes	Relation type
ENSG00000226406	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13051727	0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs13052243	0.86[JPT][hapmap]
rs13052551	0.84[YRI][hapmap]
rs13433511	0.89[ASN][1000 genomes]
rs1569338	0.95[CEU][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17241011	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17306721	0.90[ASN][1000 genomes]
rs1882876	0.83[YRI][hapmap]
rs2822929	0.85[YRI][hapmap]
rs2822936	0.95[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap]
rs2822939	0.95[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2822941	0.95[CEU][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2822942	0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2822943	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs2822944	0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2822945	0.90[ASN][1000 genomes]
rs2822948	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2822949	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2822951	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2822954	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs34352557	0.90[ASN][1000 genomes]
rs35937945	0.86[ASN][1000 genomes]
rs57323609	0.97[ASN][1000 genomes]
rs57530452	0.87[ASN][1000 genomes]
rs59113791	0.97[ASN][1000 genomes]
rs61161554	0.97[ASN][1000 genomes]
rs62219731	0.87[ASN][1000 genomes]
rs62219732	0.90[ASN][1000 genomes]
rs7277621	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7277958	0.86[YRI][hapmap]
rs7280544	0.83[YRI][hapmap]
rs7281621	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs8131603	0.82[YRI][hapmap]
rs9979051	0.95[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869911	chr21:16184645-16210579	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16199200-16204600	Weak transcription	K562	blood

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