Variant report

Variant	rs62219732
Chromosome Location	chr21:16191724-16191725
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NRIP1-1	chr21:16191164-16196736	ENSG00000235609.4

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1041402	0.93[EUR][1000 genomes]
rs10482860	0.92[EUR][1000 genomes]
rs13047105	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs13047199	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13051727	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13433511	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1569338	0.99[ASN][1000 genomes]
rs17241011	0.93[ASN][1000 genomes]
rs17306721	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964922	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1964923	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2822939	0.97[ASN][1000 genomes]
rs2822941	0.97[ASN][1000 genomes]
rs2822942	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822943	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2822944	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822945	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822948	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2822949	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2822950	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2822951	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2822954	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2822955	0.90[ASN][1000 genomes]
rs2822956	0.91[EUR][1000 genomes]
rs28385576	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34031799	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34189799	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34352557	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34424808	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs34989434	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35408407	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35937945	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57323609	0.93[ASN][1000 genomes]
rs57530452	0.97[ASN][1000 genomes]
rs59113791	0.93[ASN][1000 genomes]
rs61161554	0.93[ASN][1000 genomes]
rs62219731	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62219736	0.92[EUR][1000 genomes]
rs62219737	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7277621	0.93[ASN][1000 genomes]
rs7281621	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869911	chr21:16184645-16210579	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16191600-16193200	Enhancers	HUES48 Cell Line	embryonic stem cell

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