Variant report

Variant	rs34424808
Chromosome Location	chr21:16204467-16204468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16204438..16207040-chr21:16208422..16210550,2	K562	blood:
2	chr21:16199164..16202875-chr21:16203134..16206995,5	K562	blood:

Variant related genes	Relation type
ENSG00000226406	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1041402	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10482860	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13047105	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13047199	0.96[EUR][1000 genomes]
rs13051727	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs13433511	0.90[EUR][1000 genomes]
rs17306721	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1964922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1964923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2822942	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2822943	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2822944	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2822945	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2822948	0.94[EUR][1000 genomes]
rs2822949	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2822950	0.95[EUR][1000 genomes]
rs2822951	0.94[EUR][1000 genomes]
rs2822954	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2822956	0.99[EUR][1000 genomes]
rs28385576	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34031799	0.96[EUR][1000 genomes]
rs34189799	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34352557	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs34989434	0.96[EUR][1000 genomes]
rs35408407	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35937945	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62219731	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62219732	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs62219736	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62219737	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869911	chr21:16184645-16210579	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16199200-16204600	Weak transcription	K562	blood

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