Variant report

Variant	rs62219736
Chromosome Location	chr21:16212873-16212874
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16160216..16161938-chr21:16211062..16213501,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AF127577.1-5	chr21:16212636-16214023	XLOC_013863

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1041402	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10482860	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13047105	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13047199	0.94[EUR][1000 genomes]
rs13051727	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13433511	0.88[EUR][1000 genomes]
rs17306721	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1964922	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1964923	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2822942	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2822943	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2822944	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2822945	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2822948	0.92[EUR][1000 genomes]
rs2822949	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2822950	0.93[EUR][1000 genomes]
rs2822951	0.92[EUR][1000 genomes]
rs2822954	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2822956	0.97[EUR][1000 genomes]
rs28385576	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34031799	0.94[EUR][1000 genomes]
rs34189799	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34352557	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs34424808	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34989434	0.94[EUR][1000 genomes]
rs35408407	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35937945	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62219731	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62219732	0.92[EUR][1000 genomes]
rs62219737	0.95[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16209000-16213400	Weak transcription	Pancreas	Pancrea
2	chr21:16210400-16214800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr21:16211200-16213200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr21:16212600-16226000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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