Variant report

Variant	rs34989434
Chromosome Location	chr21:16205855-16205856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr21:16205656-16205889	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16204438..16207040-chr21:16208422..16210550,2	K562	blood:
2	chr21:16199164..16202875-chr21:16203134..16206995,5	K562	blood:

Variant related genes	Relation type
RBMX2P1	TF binding region
ENSG00000226406	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1041402	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10482860	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs13047105	0.96[EUR][1000 genomes]
rs13047199	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13051727	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13433511	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17306721	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1964922	0.95[EUR][1000 genomes]
rs1964923	0.95[EUR][1000 genomes]
rs2822942	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2822943	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2822944	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2822945	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2822948	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2822949	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2822950	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2822951	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2822954	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2822956	0.95[EUR][1000 genomes]
rs28385576	0.93[EUR][1000 genomes]
rs34031799	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34189799	0.93[EUR][1000 genomes]
rs34352557	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34424808	0.96[EUR][1000 genomes]
rs35408407	0.82[EUR][1000 genomes]
rs35937945	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62219731	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62219732	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62219736	0.94[EUR][1000 genomes]
rs62219737	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7281621	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869911	chr21:16184645-16210579	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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