Variant report

Variant	rs2822948
Chromosome Location	chr21:16193762-16193763
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16191874..16193989-chr21:16194456..16197397,3	K562	blood:
2	chr21:16192306..16193989-chr21:16194456..16197345,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NRIP1-1	chr21:16193529-16194127	ENSG00000235609.4
2	lnc-NRIP1-1	chr21:16191164-16196736	ENSG00000235609.4

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1041402	0.91[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10482860	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11909551	0.83[CEU][hapmap]
rs13047105	0.94[EUR][1000 genomes]
rs13047199	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13048782	0.91[CEU][hapmap]
rs13051727	0.82[CEU][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13052074	0.83[CEU][hapmap]
rs13052243	0.91[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs13433511	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1569338	0.86[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs17241011	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17274666	1.00[YRI][hapmap]
rs17306721	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1964922	0.95[EUR][1000 genomes]
rs1964923	0.95[EUR][1000 genomes]
rs2011512	0.81[CEU][hapmap]
rs2178898	1.00[YRI][hapmap]
rs2822930	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs2822934	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs2822935	1.00[YRI][hapmap]
rs2822936	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs2822939	0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs2822941	0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs2822942	0.91[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2822943	1.00[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2822944	0.91[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2822945	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2822949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2822950	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2822951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822954	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2822955	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2822956	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2822959	0.85[CEU][hapmap]
rs28385576	0.93[EUR][1000 genomes]
rs34031799	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34189799	0.93[EUR][1000 genomes]
rs34352557	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34424808	0.94[EUR][1000 genomes]
rs34989434	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35408407	0.82[EUR][1000 genomes]
rs35937945	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57323609	0.96[ASN][1000 genomes]
rs57530452	0.91[ASN][1000 genomes]
rs59113791	0.96[ASN][1000 genomes]
rs61161554	0.96[ASN][1000 genomes]
rs62219731	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62219732	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62219736	0.92[EUR][1000 genomes]
rs62219737	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7277621	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7281621	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9979051	0.80[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869911	chr21:16184645-16210579	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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