Variant report
| Variant | rs57530452 |
|---|---|
| Chromosome Location | chr21:16189238-16189239 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr21:16182601..16185145-chr21:16186728..16189405,2 | K562 | blood: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-AF127577.1-9 | chr21:16188836-16189246 | l_2171_chr21:16183738-16189246_brain |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs12053661 | 0.87[AMR][1000 genomes] |
| rs12053685 | 0.87[AMR][1000 genomes] |
| rs13051727 | 0.99[ASN][1000 genomes] |
| rs13433511 | 0.99[ASN][1000 genomes] |
| rs1569338 | 0.96[ASN][1000 genomes] |
| rs17241011 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17306721 | 0.97[ASN][1000 genomes] |
| rs2094859 | 0.91[AMR][1000 genomes] |
| rs2822939 | 1.00[ASN][1000 genomes] |
| rs2822941 | 1.00[ASN][1000 genomes] |
| rs2822942 | 0.97[ASN][1000 genomes] |
| rs2822943 | 0.89[ASN][1000 genomes] |
| rs2822944 | 0.97[ASN][1000 genomes] |
| rs2822945 | 0.97[ASN][1000 genomes] |
| rs2822948 | 0.91[ASN][1000 genomes] |
| rs2822949 | 0.89[ASN][1000 genomes] |
| rs2822951 | 0.91[ASN][1000 genomes] |
| rs2822954 | 0.90[ASN][1000 genomes] |
| rs2822955 | 0.87[ASN][1000 genomes] |
| rs34352557 | 0.97[ASN][1000 genomes] |
| rs35937945 | 0.96[ASN][1000 genomes] |
| rs57323609 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs59113791 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs61161554 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs62219731 | 1.00[ASN][1000 genomes] |
| rs62219732 | 0.97[ASN][1000 genomes] |
| rs7277621 | 0.90[ASN][1000 genomes] |
| rs7281621 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869911 | chr21:16184645-16210579 | Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:16188000-16189600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
