Variant report

Variant	rs2822939
Chromosome Location	chr21:16186376-16186377
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13051727	0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs13052243	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13433511	0.99[ASN][1000 genomes]
rs1569338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17241011	0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs17306721	0.97[ASN][1000 genomes]
rs2822936	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2822941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822942	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2822943	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2822944	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2822945	0.97[ASN][1000 genomes]
rs2822948	0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs2822949	0.86[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs2822951	0.85[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs2822954	0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2822955	0.95[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34352557	0.97[ASN][1000 genomes]
rs35937945	0.96[ASN][1000 genomes]
rs57323609	0.90[ASN][1000 genomes]
rs57530452	1.00[ASN][1000 genomes]
rs59113791	0.90[ASN][1000 genomes]
rs61161554	0.90[ASN][1000 genomes]
rs62219731	1.00[ASN][1000 genomes]
rs62219732	0.97[ASN][1000 genomes]
rs7277621	0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs7281621	0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs9979051	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869911	chr21:16184645-16210579	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16186200-16186400	Enhancers	GM12878-XiMat	blood

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