Variant report

Variant	rs17241011
Chromosome Location	chr21:16202740-16202741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HDAC2	chr21:16202644-16203030	MCF-7	breast:	n/a	n/a
2	ZNF217	chr21:16202525-16202880	MCF-7	breast:	n/a	n/a
3	GATA3	chr21:16202462-16203112	MCF-7	breast:	n/a	n/a
4	GATA3	chr21:16202373-16203111	MCF-7	breast:	n/a	n/a
5	SIN3AK20	chr21:16202533-16203136	MCF-7	breast:	n/a	n/a
6	TCF7L2	chr21:16202639-16202958	MCF-7	breast:	n/a	n/a
7	SIN3AK20	chr21:16202444-16203196	MCF-7	breast:	n/a	n/a
8	GATA3	chr21:16202615-16203065	MCF-7	breast:	n/a	n/a
9	FOXA1	chr21:16202699-16202999	HepG2	liver:	n/a	n/a
10	NR2F2	chr21:16202518-16203142	MCF-7	breast:	n/a	n/a
11	GATA3	chr21:16202682-16203032	T-47D	breast:	n/a	n/a
12	GATA3	chr21:16202645-16203123	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
RBMX2P1	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12053661	0.87[AMR][1000 genomes]
rs12053685	0.87[AMR][1000 genomes]
rs13051727	0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs13052243	0.86[JPT][hapmap]
rs13433511	0.91[ASN][1000 genomes]
rs1569338	0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs17306721	0.93[ASN][1000 genomes]
rs2094859	0.91[AMR][1000 genomes]
rs2822936	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs2822939	0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2822941	0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2822942	0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs2822943	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs2822944	0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs2822945	0.93[ASN][1000 genomes]
rs2822948	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2822949	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2822951	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2822954	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2822955	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs34352557	0.93[ASN][1000 genomes]
rs35937945	0.89[ASN][1000 genomes]
rs57323609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57530452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59113791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61161554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62219731	0.90[ASN][1000 genomes]
rs62219732	0.93[ASN][1000 genomes]
rs7277621	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7281621	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9979051	0.80[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869911	chr21:16184645-16210579	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16199200-16204600	Weak transcription	K562	blood

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