Variant report

Variant	rs1569338
Chromosome Location	chr21:16190154-16190155
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs13047199	0.84[CHD][hapmap]
rs13051727	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13052243	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13052551	1.00[YRI][hapmap]
rs13433511	0.97[ASN][1000 genomes]
rs17241011	0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs17306721	0.99[ASN][1000 genomes]
rs1882876	0.96[YRI][hapmap]
rs2403837	0.91[LWK][hapmap];0.81[YRI][hapmap]
rs2822929	0.94[ASW][hapmap];0.85[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs2822930	0.84[CHD][hapmap]
rs2822934	0.88[CHD][hapmap]
rs2822936	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2822939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2822941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2822942	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2822943	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2822944	0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2822945	0.99[ASN][1000 genomes]
rs2822948	0.86[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs2822949	0.86[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2822951	0.84[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs2822954	0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs2822955	0.95[CEU][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34352557	0.99[ASN][1000 genomes]
rs35937945	0.95[ASN][1000 genomes]
rs57323609	0.91[ASN][1000 genomes]
rs57530452	0.96[ASN][1000 genomes]
rs59113791	0.91[ASN][1000 genomes]
rs61161554	0.91[ASN][1000 genomes]
rs62219731	0.96[ASN][1000 genomes]
rs62219732	0.99[ASN][1000 genomes]
rs7277621	0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs7277958	1.00[YRI][hapmap]
rs7280544	0.96[YRI][hapmap]
rs7281621	0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs8131603	0.89[ASW][hapmap];0.96[LWK][hapmap];0.84[MKK][hapmap];0.96[YRI][hapmap]
rs9979051	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9984950	0.88[CHD][hapmap];0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869911	chr21:16184645-16210579	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16189600-16190200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr21:16189600-16190600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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