Variant report

Variant	rs7277621
Chromosome Location	chr21:16202787-16202788
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HDAC2	chr21:16202644-16203030	MCF-7	breast:	n/a	n/a
2	ZNF217	chr21:16202525-16202880	MCF-7	breast:	n/a	n/a
3	GATA3	chr21:16202462-16203112	MCF-7	breast:	n/a	n/a
4	GATA3	chr21:16202373-16203111	MCF-7	breast:	n/a	n/a
5	SIN3AK20	chr21:16202533-16203136	MCF-7	breast:	n/a	n/a
6	TCF7L2	chr21:16202639-16202958	MCF-7	breast:	n/a	n/a
7	SIN3AK20	chr21:16202444-16203196	MCF-7	breast:	n/a	n/a
8	GATA3	chr21:16202615-16203065	MCF-7	breast:	n/a	n/a
9	FOXA1	chr21:16202699-16202999	HepG2	liver:	n/a	n/a
10	FOXA2	chr21:16202772-16203026	HepG2	liver:	n/a	n/a
11	NR2F2	chr21:16202518-16203142	MCF-7	breast:	n/a	n/a
12	GATA3	chr21:16202682-16203032	T-47D	breast:	n/a	n/a
13	GATA3	chr21:16202645-16203123	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
RBMX2P1	TF binding region

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10482860	0.85[CEU][hapmap]
rs11909551	0.92[CEU][hapmap]
rs12053660	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13046559	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13047199	0.85[CEU][hapmap]
rs13048782	0.91[CEU][hapmap]
rs13048847	0.92[CEU][hapmap]
rs13049498	0.80[EUR][1000 genomes]
rs13051727	0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs13052074	0.92[CEU][hapmap]
rs13052243	0.86[JPT][hapmap]
rs13433511	0.91[ASN][1000 genomes]
rs1569338	0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs17241011	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17306721	0.93[ASN][1000 genomes]
rs2011512	0.91[CEU][hapmap]
rs2103467	0.92[CEU][hapmap]
rs2822923	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2822924	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2822925	0.80[EUR][1000 genomes]
rs2822927	0.92[CEU][hapmap]
rs2822928	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2822929	0.92[CEU][hapmap]
rs2822936	0.86[JPT][hapmap]
rs2822939	0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2822941	0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2822942	0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs2822943	0.80[CEU][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs2822944	0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs2822945	0.93[ASN][1000 genomes]
rs2822948	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2822949	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2822950	0.83[CEU][hapmap]
rs2822951	0.84[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2822954	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2822955	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2822956	0.85[CEU][hapmap]
rs2822958	0.81[YRI][hapmap];0.86[AFR][1000 genomes]
rs2822959	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34352557	0.93[ASN][1000 genomes]
rs35076443	0.80[EUR][1000 genomes]
rs35937945	0.89[ASN][1000 genomes]
rs4817379	0.92[CEU][hapmap]
rs57323609	1.00[ASN][1000 genomes]
rs57530452	0.90[ASN][1000 genomes]
rs59113791	1.00[ASN][1000 genomes]
rs61161554	1.00[ASN][1000 genomes]
rs62219731	0.90[ASN][1000 genomes]
rs62219732	0.93[ASN][1000 genomes]
rs7277958	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7281621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8132509	0.92[CEU][hapmap]
rs9979051	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869911	chr21:16184645-16210579	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16199200-16204600	Weak transcription	K562	blood

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