Variant report

Variant	rs2822924
Chromosome Location	chr21:16145761-16145762
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16143951..16146224-chr21:16159304..16162772,3	K562	blood:
2	chr21:16144518..16147487-chr21:16436685..16438487,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180530	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11909551	0.92[CEU][hapmap];0.92[YRI][hapmap]
rs12053660	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12053661	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12053685	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12481742	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs13046559	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13047199	0.84[CHD][hapmap]
rs13048782	0.91[CEU][hapmap];0.96[YRI][hapmap]
rs13048847	0.92[CEU][hapmap]
rs13049498	0.95[EUR][1000 genomes]
rs13050196	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs13052074	0.92[CEU][hapmap]
rs13052509	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13052551	0.90[CHB][hapmap]
rs2011512	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2026844	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2094859	1.00[ASN][1000 genomes]
rs2103467	0.92[CEU][hapmap]
rs2822918	0.86[GIH][hapmap]
rs2822923	0.92[CEU][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2822925	0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2822927	0.92[CEU][hapmap]
rs2822928	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822929	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap]
rs2822930	0.91[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs2822932	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2822934	0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs2822942	0.85[GIH][hapmap];0.81[MEX][hapmap]
rs2822959	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs34888833	0.86[EUR][1000 genomes]
rs35076443	0.95[EUR][1000 genomes]
rs4817379	0.92[CEU][hapmap]
rs7277621	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7277958	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7281621	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs8132509	0.92[CEU][hapmap]
rs9636851	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9976399	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs9984950	0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16143400-16146200	Enhancers	K562	blood

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