Variant report

Variant	rs35408407
Chromosome Location	chr10:19369717-19369718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:19369325..19371479-chr10:19375493..19377980,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1041402	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10482860	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13047105	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13047199	0.82[EUR][1000 genomes]
rs13051727	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13433511	0.85[EUR][1000 genomes]
rs17306721	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1964922	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1964923	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2822918	0.86[AMR][1000 genomes]
rs2822942	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2822943	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2822944	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2822945	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2822948	0.82[EUR][1000 genomes]
rs2822949	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2822950	0.83[EUR][1000 genomes]
rs2822951	0.82[EUR][1000 genomes]
rs2822954	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2822956	0.84[EUR][1000 genomes]
rs28385576	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34031799	0.82[EUR][1000 genomes]
rs34189799	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34352557	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34424808	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34989434	0.82[EUR][1000 genomes]
rs35937945	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62219731	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs62219732	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62219736	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3493336	chr10:19216608-19378036	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3493337	chr10:19216667-19377987	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv894917	chr10:19259024-19463367	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv528472	chr10:19296750-19385248	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv947594	chr10:19342392-19376962	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19369600-19371600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:19369600-19371600	Weak transcription	Fetal Intestine Large	intestine

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