Variant report

Variant	rs10003001
Chromosome Location	chr4:9984475-9984476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 238 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:200)

rs_ID	r²[population]
rs10000983	0.82[ASN][1000 genomes]
rs10001964	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs10008035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10011206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10017674	0.84[ASN][1000 genomes]
rs10018204	0.88[ASN][1000 genomes]
rs10032756	0.88[CHB][hapmap]
rs10033612	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516198	1.00[JPT][hapmap]
rs1079128	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs10939636	0.94[ASN][1000 genomes]
rs1122142	0.84[ASN][1000 genomes]
rs11724510	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs11727087	0.82[JPT][hapmap]
rs11734209	1.00[JPT][hapmap]
rs11930388	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11931553	0.86[CHB][hapmap]
rs11936395	0.94[EUR][1000 genomes]
rs11937310	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11940661	0.82[JPT][hapmap]
rs11946054	0.88[CHB][hapmap]
rs12498150	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs12498956	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs12506122	0.82[JPT][hapmap]
rs13103497	0.94[ASN][1000 genomes]
rs13110307	0.82[JPT][hapmap]
rs13115776	0.82[JPT][hapmap]
rs13125029	0.94[ASN][1000 genomes]
rs13129453	0.82[JPT][hapmap]
rs13139055	0.82[JPT][hapmap]
rs13145554	0.94[ASN][1000 genomes]
rs13146686	0.82[JPT][hapmap]
rs13328050	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs13435674	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16889496	0.88[CHB][hapmap]
rs16889509	0.88[CHB][hapmap]
rs16889519	0.88[CHB][hapmap]
rs16890590	0.82[JPT][hapmap]
rs16891234	0.88[CEU][hapmap];0.88[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17185835	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs17185870	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs17245436	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs17245723	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2018643	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2241464	1.00[JPT][hapmap]
rs28480661	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28513781	0.88[ASN][1000 genomes]
rs28558552	0.88[ASN][1000 genomes]
rs28610447	0.94[ASN][1000 genomes]
rs28613263	0.86[ASN][1000 genomes]
rs28715627	0.86[ASN][1000 genomes]
rs28837683	0.88[ASN][1000 genomes]
rs34297373	0.83[ASN][1000 genomes]
rs34435610	0.82[ASN][1000 genomes]
rs35954357	0.94[ASN][1000 genomes]
rs3733587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775940	0.82[JPT][hapmap]
rs3796834	0.93[CHD][hapmap];1.00[JPT][hapmap]
rs4235347	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs4235348	0.82[ASN][1000 genomes]
rs4276278	0.84[ASN][1000 genomes]
rs4292327	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4292329	0.82[JPT][hapmap]
rs4292332	0.84[ASN][1000 genomes]
rs4292333	0.84[ASN][1000 genomes]
rs4295261	0.88[ASN][1000 genomes]
rs4305511	0.84[ASN][1000 genomes]
rs4306953	0.84[ASN][1000 genomes]
rs4311316	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs4312757	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs4314284	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs4339211	0.84[ASN][1000 genomes]
rs4385058	0.84[ASN][1000 genomes]
rs4407505	0.82[ASN][1000 genomes]
rs4447861	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs4455410	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs4459989	0.82[JPT][hapmap]
rs4459990	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs4466042	0.84[ASN][1000 genomes]
rs4467563	0.84[ASN][1000 genomes]
rs4467564	0.84[ASN][1000 genomes]
rs4473652	0.82[JPT][hapmap]
rs4473653	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs4476596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4481234	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4505821	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4511996	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4515163	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs4519796	0.86[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs4533775	0.82[JPT][hapmap]
rs4543113	0.82[JPT][hapmap]
rs4547795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4560411	0.82[ASN][1000 genomes]
rs4575994	0.87[ASN][1000 genomes]
rs4580649	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs4588456	0.88[ASN][1000 genomes]
rs4621431	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs4627861	0.84[ASN][1000 genomes]
rs4639072	0.89[CHB][hapmap]
rs4697914	0.82[ASN][1000 genomes]
rs56296130	0.94[ASN][1000 genomes]
rs57250714	0.94[ASN][1000 genomes]
rs57574512	0.88[ASN][1000 genomes]
rs58130873	0.94[ASN][1000 genomes]
rs59924619	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60045583	0.94[ASN][1000 genomes]
rs62293333	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62294293	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62294328	0.84[ASN][1000 genomes]
rs62294329	0.84[ASN][1000 genomes]
rs62294331	0.88[ASN][1000 genomes]
rs62294332	0.88[ASN][1000 genomes]
rs6414766	0.82[ASN][1000 genomes]
rs6449049	0.85[CHB][hapmap]
rs6449052	0.88[CHB][hapmap]
rs6449154	0.84[ASN][1000 genomes]
rs6449155	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs6449156	0.82[JPT][hapmap]
rs6449157	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6449158	0.88[ASN][1000 genomes]
rs6449159	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6449165	0.88[ASN][1000 genomes]
rs6449166	0.88[ASN][1000 genomes]
rs6449167	0.88[ASN][1000 genomes]
rs6449171	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6449172	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6449174	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6449175	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6449176	0.88[ASN][1000 genomes]
rs6449177	0.80[ASN][1000 genomes]
rs6449178	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6449179	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6449201	0.89[CHB][hapmap];0.87[ASN][1000 genomes]
rs6449202	0.88[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs6449237	1.00[JPT][hapmap]
rs67163329	0.84[ASN][1000 genomes]
rs67820465	0.94[ASN][1000 genomes]
rs68107257	0.84[ASN][1000 genomes]
rs6814556	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6814664	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs6815001	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6815895	0.91[EUR][1000 genomes]
rs6820230	0.93[CHD][hapmap];1.00[JPT][hapmap]
rs6823361	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6823549	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6827754	0.82[JPT][hapmap]
rs6829727	0.82[JPT][hapmap]
rs6829755	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6833878	0.80[ASN][1000 genomes]
rs6834893	0.88[ASN][1000 genomes]
rs6836706	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6837224	0.84[ASN][1000 genomes]
rs6839490	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6843873	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6844316	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6844787	0.88[ASN][1000 genomes]
rs6845554	0.82[JPT][hapmap]
rs6847019	0.93[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6849729	0.88[ASN][1000 genomes]
rs6850143	0.88[ASN][1000 genomes]
rs6850684	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6852441	0.89[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs6856127	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs714815	0.82[JPT][hapmap]
rs73098626	0.84[ASN][1000 genomes]
rs73227853	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7375587	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7375642	0.84[ASN][1000 genomes]
rs7376505	0.82[ASN][1000 genomes]
rs7376948	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7377578	0.81[ASN][1000 genomes]
rs7377625	0.82[ASN][1000 genomes]
rs7378305	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7378340	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7435196	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs7437120	0.82[ASN][1000 genomes]
rs7657340	0.82[ASN][1000 genomes]
rs7658170	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7663097	0.88[ASN][1000 genomes]
rs7672947	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs7676733	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs7677710	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs7683283	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs7686538	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7694997	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7695113	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696536	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7696895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7699609	0.88[ASN][1000 genomes]
rs881971	0.82[JPT][hapmap]
rs9291645	0.93[CHD][hapmap];1.00[JPT][hapmap]
rs938553	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs950309	0.88[CHB][hapmap]
rs9990770	0.88[CHB][hapmap]
rs9992406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992815	0.88[CHB][hapmap]
rs9993410	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs9994266	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs9994937	0.88[ASN][1000 genomes]
rs9998739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv1010249	chr4:9716101-10086188	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv878672	chr4:9786732-10008305	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv878677	chr4:9797703-10008305	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv878681	chr4:9802853-10397327	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
8	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
9	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
10	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
11	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
12	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
13	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
14	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
15	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
16	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
17	esv2763339	chr4:9858426-10056376	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv878684	chr4:9863698-9998440	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv878686	chr4:9893403-10008305	Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv537026	chr4:9903566-10262258	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
21	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
22	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
23	esv2752052	chr4:9911872-10313111	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
24	nsv878687	chr4:9912101-10008305	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv878688	chr4:9915850-10038112	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
26	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
27	nsv878689	chr4:9943185-10008305	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
28	nsv878690	chr4:9944650-10008305	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
29	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
30	nsv532706	chr4:9948018-10451450	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
31	nsv1013022	chr4:9961220-10230042	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
32	nsv537028	chr4:9961220-10230042	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
33	nsv537029	chr4:9961220-10262258	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
34	nsv878691	chr4:9966477-10418078	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
35	nsv1013487	chr4:9972011-10320963	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
36	esv3438391	chr4:9980654-9984852	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	n/a	n/a	inside rSNPs	diseases
37	nsv527147	chr4:9981889-9984475	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	diseases
38	nsv829857	chr4:9982514-10155835	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10003001	SLC2A9	cis	parietal	SCAN
rs10003001	CLNK	cis	parietal	SCAN
rs10003001	JAKMIP1	cis	cerebellum	SCAN
rs10003001	DRD5	cis	parietal	SCAN
rs10003001	HSP90AB2P	cis	cerebellum	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:9958600-9984800	Weak transcription	Aorta	Aorta
2	chr4:9963400-9996400	Weak transcription	Adipose Nuclei	Adipose
3	chr4:9964200-9986600	Weak transcription	Ovary	ovary
4	chr4:9970000-9988600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr4:9970000-9989800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:9970600-9991200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:9972200-9988200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:9972200-9988400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:9972800-9986800	Weak transcription	Placenta	Placenta
10	chr4:9972800-9988600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr4:9974200-9989000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:9974200-9990400	Weak transcription	HSMMtube	muscle
13	chr4:9977600-9986800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:9977600-9988200	Strong transcription	HepG2	liver
15	chr4:9977800-10003600	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:9978200-9988200	Strong transcription	NHEK	skin
17	chr4:9978200-9996400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:9978800-9987600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:9978800-9995400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr4:9979000-9987200	Weak transcription	Fetal Stomach	stomach
21	chr4:9979400-9987400	Strong transcription	Fetal Intestine Small	intestine
22	chr4:9979600-9987200	Weak transcription	Left Ventricle	heart
23	chr4:9979800-9995600	Weak transcription	Colonic Mucosa	Colon
24	chr4:9980800-10007200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr4:9981000-9989800	Weak transcription	Stomach Mucosa	stomach
26	chr4:9981200-9989800	Weak transcription	Brain Substantia Nigra	brain
27	chr4:9981400-9986600	Weak transcription	Brain Hippocampus Middle	brain
28	chr4:9981400-9991800	Weak transcription	Brain Angular Gyrus	brain
29	chr4:9982800-10002800	Weak transcription	Gastric	stomach
30	chr4:9983000-9985200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr4:9983000-9985200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr4:9983000-9986000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:9983000-9986200	Weak transcription	Spleen	Spleen
34	chr4:9983000-9986400	Weak transcription	Esophagus	oesophagus
35	chr4:9983000-9986400	Weak transcription	Pancreas	Pancrea
36	chr4:9983000-9989600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:9983000-9991200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr4:9983000-9992200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr4:9983000-9995600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr4:9983400-9988000	Strong transcription	Fetal Intestine Large	intestine
41	chr4:9983800-9988200	Strong transcription	Liver	Liver
42	chr4:9984400-9985800	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links