Variant report

Variant	rs6829755
Chromosome Location	chr4:9903518-9903519
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 183 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs10001964	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs10003001	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10008035	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10009657	0.83[AMR][1000 genomes]
rs10011206	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10018204	0.88[CHB][hapmap]
rs10022660	0.83[AMR][1000 genomes]
rs10025644	0.83[AMR][1000 genomes]
rs10025968	0.83[AMR][1000 genomes]
rs10027276	0.81[EUR][1000 genomes]
rs10032756	1.00[CHB][hapmap]
rs10033612	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10516198	1.00[JPT][hapmap]
rs1079128	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs10805343	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs11724510	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs11727087	0.82[JPT][hapmap]
rs11930077	0.83[AMR][1000 genomes]
rs11931553	1.00[CHB][hapmap]
rs11933838	0.88[CHB][hapmap]
rs11935405	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs11937310	0.89[ASN][1000 genomes]
rs11938866	0.83[AMR][1000 genomes]
rs11940661	0.90[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs11946054	1.00[CHB][hapmap]
rs12498150	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs12498956	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs12506122	0.82[JPT][hapmap]
rs13110307	0.82[JPT][hapmap]
rs13115776	0.82[JPT][hapmap]
rs13129453	0.82[JPT][hapmap]
rs13139055	0.82[JPT][hapmap]
rs13146686	0.82[JPT][hapmap]
rs13328050	0.82[JPT][hapmap]
rs13435674	0.83[ASN][1000 genomes]
rs16889496	1.00[CHB][hapmap]
rs16889509	1.00[CHB][hapmap]
rs16889519	1.00[CHB][hapmap]
rs16890590	0.90[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs16890728	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[EUR][1000 genomes]
rs16891234	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17185835	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs17185870	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs17245436	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs17245723	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs2018643	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs2280204	0.90[CEU][hapmap];0.88[CHB][hapmap];0.83[EUR][1000 genomes]
rs28480661	0.89[ASN][1000 genomes]
rs28504140	0.83[AMR][1000 genomes]
rs28735365	0.83[AMR][1000 genomes]
rs28831091	0.83[AMR][1000 genomes]
rs3733587	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3775940	0.82[JPT][hapmap]
rs3796834	1.00[JPT][hapmap]
rs4235347	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs4292327	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4311316	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs4312757	0.82[JPT][hapmap]
rs4314284	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs4339211	0.88[CHB][hapmap]
rs4376135	0.81[EUR][1000 genomes]
rs4382035	0.81[EUR][1000 genomes]
rs4389579	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs4447861	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs4455410	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs4459990	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs4473653	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs4476596	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4505821	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4511996	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4515163	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs4519796	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs4543113	0.82[JPT][hapmap]
rs4547795	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4560411	0.86[CHB][hapmap]
rs4580649	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs4621431	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs4639072	0.81[EUR][1000 genomes]
rs4697696	0.86[ASN][1000 genomes]
rs4697697	0.86[ASN][1000 genomes]
rs4697914	0.88[CHB][hapmap]
rs55801162	0.81[EUR][1000 genomes]
rs55962381	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56003345	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56014085	0.80[AMR][1000 genomes]
rs56253435	0.83[AMR][1000 genomes]
rs59574200	0.83[AMR][1000 genomes]
rs61338451	0.83[AMR][1000 genomes]
rs62293330	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62293333	0.91[ASN][1000 genomes]
rs62294293	0.81[ASN][1000 genomes]
rs6449026	0.83[AMR][1000 genomes]
rs6449049	1.00[CHB][hapmap]
rs6449051	0.86[CHB][hapmap]
rs6449052	1.00[CHB][hapmap]
rs6449155	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6449156	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6449157	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6449159	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6449171	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6449172	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6449174	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6449175	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6449178	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6449179	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6449202	0.82[JPT][hapmap]
rs6449237	1.00[JPT][hapmap]
rs6814556	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6814664	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6815001	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6815895	0.87[ASN][1000 genomes]
rs6817564	0.83[AMR][1000 genomes]
rs6820230	1.00[JPT][hapmap]
rs6823361	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6827754	0.82[JPT][hapmap]
rs6829727	0.82[JPT][hapmap]
rs6834893	0.88[CHB][hapmap]
rs6834978	0.85[CHB][hapmap]
rs6836706	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6837273	0.88[CHB][hapmap];0.83[AMR][1000 genomes]
rs6838850	0.88[CHB][hapmap]
rs6839490	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6843873	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6844316	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6845554	0.82[JPT][hapmap]
rs6847019	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6849729	0.88[CHB][hapmap]
rs6850684	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6852441	0.82[JPT][hapmap]
rs6856127	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7375587	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7376948	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7378305	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7378340	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7435196	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7658170	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7672947	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7676733	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7677710	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7680554	0.83[AMR][1000 genomes]
rs7683283	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7686538	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7694997	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7696536	1.00[JPT][hapmap]
rs7696895	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs881971	0.88[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs9291645	1.00[JPT][hapmap]
rs938553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs950309	1.00[CHB][hapmap]
rs9990770	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs9992406	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9992815	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs9993410	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs9994266	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs9998739	0.88[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv1010249	chr4:9716101-10086188	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv878671	chr4:9766888-9912101	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv878672	chr4:9786732-10008305	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv878675	chr4:9797703-9915741	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv878676	chr4:9797703-9978094	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv878677	chr4:9797703-10008305	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1007593	chr4:9802146-9956285	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv878680	chr4:9802853-9907336	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv878681	chr4:9802853-10397327	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
13	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
14	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
15	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
16	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
17	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
18	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
19	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
20	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
21	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
22	nsv1004311	chr4:9825814-9978414	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
23	nsv998425	chr4:9834666-9961280	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
24	nsv878683	chr4:9844621-9911843	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	esv2763339	chr4:9858426-10056376	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
26	nsv878684	chr4:9863698-9998440	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
27	nsv878685	chr4:9888994-9915741	Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	nsv878686	chr4:9893403-10008305	Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:9882600-9903600	Weak transcription	Fetal Intestine Large	intestine
2	chr4:9888800-9905800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:9889000-9906200	Weak transcription	Liver	Liver
4	chr4:9890600-9905600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:9892200-9903600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:9892800-9903600	Weak transcription	NHEK	skin
7	chr4:9894000-9917800	Weak transcription	Lung	lung
8	chr4:9895800-9906800	Weak transcription	Right Atrium	heart
9	chr4:9897000-9924600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:9899800-9903600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:9900400-9911000	Weak transcription	Aorta	Aorta
12	chr4:9901000-9910400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr4:9901200-9904200	Weak transcription	HMEC	breast
14	chr4:9902000-9903600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr4:9902000-9906800	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:9902000-9907000	Weak transcription	Fetal Stomach	stomach
17	chr4:9902000-9909400	Weak transcription	Adipose Nuclei	Adipose
18	chr4:9902400-9903600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:9902800-9910600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:9903000-9903600	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr4:9903200-9903600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:9903200-9905800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:9903400-9923200	Strong transcription	HepG2	liver

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