Variant report

Variant	rs3775940
Chromosome Location	chr4:10025163-10025164
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr4:10024364-10025216	GM12878	blood:	n/a	chr4:10024905-10024918 chr4:10024861-10024870

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:9770192..9773137-chr4:10024212..10026749,2	K562	blood:
2	chr4:10019661..10022849-chr4:10023062..10025452,3	K562	blood:

Variant related genes	Relation type
SLC2A9	TF binding region
ENSG00000109667	Chromatin interaction

Extended variants
information (count: 197 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:162)

rs_ID	r²[population]
rs10001964	1.00[JPT][hapmap]
rs10003001	0.82[JPT][hapmap]
rs10008035	0.82[JPT][hapmap]
rs10011206	0.82[JPT][hapmap]
rs10018204	1.00[JPT][hapmap]
rs10030570	0.85[ASN][1000 genomes]
rs10033612	0.82[JPT][hapmap]
rs10516198	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1079128	1.00[JPT][hapmap]
rs10939665	0.85[CEU][hapmap]
rs10939669	0.85[CEU][hapmap]
rs10939671	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10939672	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1122966	0.85[ASN][1000 genomes]
rs11722930	0.85[CEU][hapmap]
rs11723591	0.82[CEU][hapmap]
rs11724510	1.00[JPT][hapmap]
rs11727087	0.89[CEU][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs11727199	0.85[CEU][hapmap]
rs11731110	0.85[CEU][hapmap]
rs11734209	0.82[JPT][hapmap]
rs12498150	1.00[JPT][hapmap]
rs12498956	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs12500805	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12504565	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12506122	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12506455	0.85[CEU][hapmap]
rs12508991	0.85[CEU][hapmap]
rs13101785	0.85[CEU][hapmap]
rs13103497	0.88[CHB][hapmap]
rs13103879	0.83[CEU][hapmap]
rs13110307	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13115776	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13120348	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13122689	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13124007	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13125029	1.00[JPT][hapmap]
rs13129453	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13133766	0.85[CEU][hapmap]
rs13137343	0.85[CEU][hapmap]
rs13139055	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13144709	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13146686	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13328050	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs16891234	0.82[JPT][hapmap]
rs17185835	1.00[JPT][hapmap]
rs17185870	1.00[JPT][hapmap]
rs17187075	0.85[CEU][hapmap]
rs17245436	1.00[JPT][hapmap]
rs17245723	1.00[JPT][hapmap]
rs17247314	0.85[CEU][hapmap]
rs2018643	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs2240720	0.85[CEU][hapmap]
rs2240721	0.85[CEU][hapmap]
rs2240724	0.89[CEU][hapmap]
rs2241483	0.80[CEU][hapmap]
rs28449404	0.85[ASN][1000 genomes]
rs3733585	0.85[CEU][hapmap]
rs3733587	0.82[JPT][hapmap]
rs3756236	0.85[CEU][hapmap]
rs3775945	0.85[ASN][1000 genomes]
rs3796830	0.85[ASN][1000 genomes]
rs3796833	0.85[ASN][1000 genomes]
rs3796834	0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[LWK][hapmap];0.83[YRI][hapmap];0.85[ASN][1000 genomes]
rs3796837	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796842	0.85[CEU][hapmap]
rs4235347	1.00[JPT][hapmap]
rs4292327	0.82[JPT][hapmap]
rs4311316	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs4312757	1.00[JPT][hapmap]
rs4314284	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs4318649	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4318650	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339211	1.00[JPT][hapmap]
rs4447861	1.00[JPT][hapmap]
rs4455410	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs4459990	1.00[JPT][hapmap]
rs4473653	1.00[JPT][hapmap]
rs4476596	0.82[JPT][hapmap]
rs4505821	0.82[JPT][hapmap]
rs4511996	0.82[JPT][hapmap]
rs4515163	1.00[JPT][hapmap]
rs4519796	1.00[JPT][hapmap]
rs4529049	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4543113	0.85[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4547795	0.82[JPT][hapmap]
rs4560411	0.82[JPT][hapmap]
rs4575994	0.81[EUR][1000 genomes]
rs4580649	1.00[JPT][hapmap]
rs4621431	1.00[JPT][hapmap]
rs4622999	0.84[CEU][hapmap]
rs4697914	1.00[JPT][hapmap]
rs55811736	0.85[ASN][1000 genomes]
rs59871456	0.85[ASN][1000 genomes]
rs6449155	1.00[JPT][hapmap]
rs6449156	1.00[JPT][hapmap]
rs6449157	1.00[JPT][hapmap]
rs6449159	1.00[JPT][hapmap]
rs6449171	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs6449172	1.00[JPT][hapmap]
rs6449174	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs6449175	0.82[JPT][hapmap]
rs6449176	1.00[JPT][hapmap]
rs6449178	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs6449179	1.00[JPT][hapmap]
rs6449201	1.00[JPT][hapmap]
rs6449202	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6449217	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6449237	0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap]
rs6449238	0.85[ASN][1000 genomes]
rs6814556	0.82[JPT][hapmap]
rs6814664	1.00[JPT][hapmap]
rs6815001	1.00[JPT][hapmap]
rs6819833	0.85[ASN][1000 genomes]
rs6820188	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6820230	0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[LWK][hapmap];0.83[YRI][hapmap];0.85[ASN][1000 genomes]
rs6823361	1.00[JPT][hapmap]
rs6827754	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827785	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6829727	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6829755	0.82[JPT][hapmap]
rs6834893	1.00[JPT][hapmap]
rs6836706	1.00[JPT][hapmap]
rs6839490	1.00[JPT][hapmap]
rs6840802	0.82[CHD][hapmap]
rs6843873	1.00[JPT][hapmap]
rs6844316	1.00[JPT][hapmap]
rs6845554	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849729	1.00[JPT][hapmap]
rs6850684	1.00[JPT][hapmap]
rs6852441	1.00[JPT][hapmap]
rs6856127	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs6857001	0.85[ASN][1000 genomes]
rs73229818	0.85[ASN][1000 genomes]
rs73229828	0.85[ASN][1000 genomes]
rs7375587	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs7376948	1.00[JPT][hapmap]
rs7378305	1.00[JPT][hapmap]
rs7378340	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs7435196	1.00[JPT][hapmap]
rs7442336	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7658170	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs7672947	1.00[JPT][hapmap]
rs7676733	1.00[JPT][hapmap]
rs7677710	1.00[JPT][hapmap]
rs7678012	0.85[CEU][hapmap]
rs7679916	0.85[CEU][hapmap]
rs7683283	1.00[JPT][hapmap]
rs7686538	1.00[JPT][hapmap]
rs7694997	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs7696536	0.82[JPT][hapmap]
rs7696895	0.82[JPT][hapmap]
rs7697004	0.85[ASN][1000 genomes]
rs7697416	0.85[ASN][1000 genomes]
rs881971	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs9291645	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs938553	0.82[JPT][hapmap]
rs9992406	0.82[JPT][hapmap]
rs9993410	1.00[JPT][hapmap]
rs9994266	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs9998739	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv1010249	chr4:9716101-10086188	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv878681	chr4:9802853-10397327	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
6	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
7	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
8	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
9	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
10	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
11	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
12	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
13	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
14	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
15	esv2763339	chr4:9858426-10056376	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv537026	chr4:9903566-10262258	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
17	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
18	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
19	esv2752052	chr4:9911872-10313111	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
20	nsv878688	chr4:9915850-10038112	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
22	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
23	nsv532706	chr4:9948018-10451450	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
24	nsv1013022	chr4:9961220-10230042	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
25	nsv537028	chr4:9961220-10230042	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
26	nsv537029	chr4:9961220-10262258	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
27	nsv878691	chr4:9966477-10418078	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
28	nsv1013487	chr4:9972011-10320963	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
29	nsv829857	chr4:9982514-10155835	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
30	nsv469621	chr4:9987670-10142287	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
31	nsv482719	chr4:9987670-10142287	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
32	nsv1008067	chr4:10004664-10262258	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
33	nsv537030	chr4:10004664-10262258	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
34	nsv593691	chr4:10013173-10050141	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
35	nsv869057	chr4:10013411-10875454	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3775940	SLC2A9	cis	parietal	SCAN

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10021200-10025600	Enhancers	Primary B cells from cord blood	blood
2	chr4:10021200-10025800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr4:10021200-10026400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:10021200-10027400	Enhancers	Right Atrium	heart
5	chr4:10021400-10025200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:10021400-10025200	Weak transcription	NH-A	brain
7	chr4:10021400-10026200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr4:10021400-10026200	Enhancers	Adipose Nuclei	Adipose
9	chr4:10021400-10026400	Enhancers	Fetal Muscle Leg	muscle
10	chr4:10021400-10029600	Weak transcription	A549	lung
11	chr4:10021400-10032000	Weak transcription	HSMMtube	muscle
12	chr4:10021600-10025200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr4:10021600-10026000	Enhancers	Right Ventricle	heart
14	chr4:10021600-10026000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr4:10021600-10035200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr4:10021800-10032000	Weak transcription	Fetal Heart	heart
17	chr4:10022200-10025200	Enhancers	Spleen	Spleen
18	chr4:10022200-10025400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr4:10022600-10025800	Enhancers	Primary B cells from peripheral blood	blood
20	chr4:10023000-10026000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:10023000-10026000	Enhancers	Fetal Muscle Trunk	muscle
22	chr4:10023000-10026000	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr4:10023000-10026400	Enhancers	Placenta	Placenta
24	chr4:10023000-10030400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr4:10023200-10025200	Weak transcription	Colonic Mucosa	Colon
26	chr4:10023200-10025800	Enhancers	Esophagus	oesophagus
27	chr4:10023200-10025800	Weak transcription	HSMM	muscle
28	chr4:10023200-10027400	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr4:10023400-10025600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr4:10023400-10026000	Enhancers	Liver	Liver
31	chr4:10023400-10026200	Enhancers	HMEC	breast
32	chr4:10023400-10027400	Enhancers	HepG2	liver
33	chr4:10023400-10027800	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr4:10023600-10025200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr4:10023600-10026000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:10023600-10026000	Enhancers	NHEK	skin
37	chr4:10023600-10026200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:10023600-10026600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr4:10024000-10032400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr4:10024200-10025200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr4:10024200-10026000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr4:10024200-10033400	Weak transcription	Fetal Intestine Large	intestine
43	chr4:10024400-10025600	Weak transcription	Brain Hippocampus Middle	brain
44	chr4:10024400-10032800	Weak transcription	Brain Anterior Caudate	brain
45	chr4:10024600-10025600	Weak transcription	Brain Substantia Nigra	brain
46	chr4:10024600-10025800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr4:10024800-10025200	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr4:10024800-10025200	Weak transcription	Left Ventricle	heart
49	chr4:10024800-10025200	Weak transcription	Lung	lung
50	chr4:10024800-10025600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin

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