Variant report

Variant	rs2240720
Chromosome Location	chr4:10020480-10020481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:10019361..10022054-chr4:10108000..10110178,2	K562	blood:
2	chr4:10019661..10022849-chr4:10023062..10025452,3	K562	blood:
3	chr4:10015413..10017936-chr4:10018958..10020655,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071127	Chromatin interaction
ENSG00000109667	Chromatin interaction

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10939655	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10939656	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10939665	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10939669	0.93[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1122141	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs11722930	0.93[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11723591	0.91[CEU][hapmap]
rs11723970	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs11727199	0.93[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11731110	0.93[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11732054	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11734375	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11734786	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11736410	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11736479	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12499857	0.93[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.81[EUR][1000 genomes]
rs12500810	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12506122	0.82[CEU][hapmap]
rs12506364	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12506455	0.93[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12506932	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12507050	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12507330	0.87[EUR][1000 genomes]
rs12508991	0.93[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12647117	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13101785	0.93[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13103690	0.96[JPT][hapmap]
rs13103879	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs13107466	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13110307	0.82[CEU][hapmap]
rs13113730	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13115193	0.92[CEU][hapmap];0.91[JPT][hapmap]
rs13115776	0.82[CEU][hapmap]
rs13121211	0.87[EUR][1000 genomes]
rs13128214	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13129453	0.82[CEU][hapmap]
rs13133766	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13137074	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13137343	0.93[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.94[YRI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13137795	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13139055	0.82[CEU][hapmap]
rs13141233	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13145442	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13149985	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13150928	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17187075	1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.84[EUR][1000 genomes]
rs17245723	0.80[CEU][hapmap]
rs17246501	0.92[CEU][hapmap];0.91[JPT][hapmap]
rs17246745	0.85[EUR][1000 genomes]
rs17247314	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2240721	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2240722	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2240724	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2276961	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34501273	0.86[EUR][1000 genomes]
rs34709913	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35099040	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35250962	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35438220	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35501905	0.83[EUR][1000 genomes]
rs35750364	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35866697	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36084205	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3733584	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3733585	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3733586	0.86[EUR][1000 genomes]
rs3756236	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3756237	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3756238	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3775938	0.94[YRI][hapmap]
rs3775940	0.85[CEU][hapmap]
rs3796829	0.82[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3796832	0.87[EUR][1000 genomes]
rs3796836	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3796842	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4235346	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs4280729	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4292328	0.93[CEU][hapmap];0.91[JPT][hapmap]
rs4447863	0.86[JPT][hapmap]
rs4529049	0.81[CEU][hapmap]
rs4622999	0.96[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4697698	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs55959894	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62293415	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6827754	0.89[CEU][hapmap]
rs6829727	0.81[CEU][hapmap]
rs6844329	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6845554	0.89[CEU][hapmap]
rs6849273	0.86[CEU][hapmap]
rs6849717	0.92[CEU][hapmap];0.91[JPT][hapmap]
rs6857693	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7375599	0.92[CEU][hapmap];0.91[JPT][hapmap]
rs7678012	1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.85[EUR][1000 genomes]
rs7679916	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs882223	0.93[CEU][hapmap];0.91[JPT][hapmap]
rs998675	0.92[CEU][hapmap];0.91[JPT][hapmap]
rs998676	0.93[CEU][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv1010249	chr4:9716101-10086188	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv878681	chr4:9802853-10397327	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
6	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
7	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
8	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
9	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
10	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
11	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
12	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
13	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
14	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
15	esv2763339	chr4:9858426-10056376	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv537026	chr4:9903566-10262258	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
17	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
18	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
19	esv2752052	chr4:9911872-10313111	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
20	nsv878688	chr4:9915850-10038112	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
22	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
23	nsv532706	chr4:9948018-10451450	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
24	nsv1013022	chr4:9961220-10230042	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
25	nsv537028	chr4:9961220-10230042	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
26	nsv537029	chr4:9961220-10262258	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
27	nsv878691	chr4:9966477-10418078	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
28	nsv1013487	chr4:9972011-10320963	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
29	nsv829857	chr4:9982514-10155835	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
30	nsv469621	chr4:9987670-10142287	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
31	nsv482719	chr4:9987670-10142287	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
32	nsv1008067	chr4:10004664-10262258	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
33	nsv537030	chr4:10004664-10262258	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
34	nsv593691	chr4:10013173-10050141	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
35	nsv869057	chr4:10013411-10875454	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10010000-10021200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:10016600-10020600	Enhancers	Liver	Liver
3	chr4:10017000-10020600	Weak transcription	GM12878-XiMat	blood
4	chr4:10017600-10020600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:10017600-10020600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:10017600-10020600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:10017800-10020600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:10017800-10020800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:10019400-10020600	Flanking Active TSS	HepG2	liver
10	chr4:10019400-10020800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:10019600-10022200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:10019800-10020800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:10020000-10020600	Enhancers	Fetal Brain Male	brain
14	chr4:10020000-10020600	Enhancers	HUVEC	blood vessel
15	chr4:10020000-10020800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:10020000-10020800	Active TSS	Muscle Satellite Cultured Cells	--
17	chr4:10020000-10020800	Active TSS	NHLF	lung
18	chr4:10020000-10021000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:10020000-10021000	Active TSS	Brain Anterior Caudate	brain
20	chr4:10020000-10021200	Active TSS	Fetal Brain Female	brain
21	chr4:10020000-10021400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:10020000-10021600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr4:10020200-10020600	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr4:10020200-10020600	Enhancers	Primary B cells from cord blood	blood
25	chr4:10020200-10020600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
26	chr4:10020200-10020600	Enhancers	Fetal Thymus	thymus
27	chr4:10020200-10020600	Flanking Active TSS	Right Ventricle	heart
28	chr4:10020200-10020600	Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr4:10020200-10020600	Flanking Active TSS	HMEC	breast
30	chr4:10020200-10020600	Active TSS	K562	blood
31	chr4:10020200-10020800	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr4:10020200-10020800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr4:10020200-10020800	Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr4:10020200-10020800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr4:10020200-10020800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:10020200-10020800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr4:10020200-10020800	Active TSS	Duodenum Mucosa	Duodenum
38	chr4:10020200-10020800	Enhancers	Fetal Heart	heart
39	chr4:10020200-10020800	Active TSS	Fetal Intestine Large	intestine
40	chr4:10020200-10020800	Active TSS	Fetal Stomach	stomach
41	chr4:10020200-10020800	Active TSS	NHEK	skin
42	chr4:10020200-10020800	Active TSS	Osteobl	bone
43	chr4:10020200-10021000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:10020200-10021000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr4:10020200-10021000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr4:10020200-10021000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr4:10020200-10021000	Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr4:10020200-10021000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr4:10020200-10021000	Active TSS	Aorta	Aorta
50	chr4:10020200-10021000	Active TSS	Brain Angular Gyrus	brain

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