Variant report

Variant	rs12499857
Chromosome Location	chr4:9995376-9995377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10939620	0.81[EUR][1000 genomes]
rs10939655	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10939656	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10939665	0.86[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10939669	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs1122141	0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs11722930	0.86[CEU][hapmap];0.87[CHB][hapmap];0.96[JPT][hapmap]
rs11723382	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11723591	0.83[CEU][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11723970	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11727199	0.85[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs11731110	0.86[CEU][hapmap];0.87[CHB][hapmap];0.96[JPT][hapmap]
rs11732054	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11736410	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11736479	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12506364	0.81[EUR][1000 genomes]
rs12506455	0.86[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs12507050	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12507330	0.94[EUR][1000 genomes]
rs12508991	0.86[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs12647117	0.81[EUR][1000 genomes]
rs13101785	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs13103690	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[ASN][1000 genomes]
rs13103879	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs13107466	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13113730	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13115193	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13121211	0.94[EUR][1000 genomes]
rs13128214	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13133766	0.93[CEU][hapmap];0.87[CHB][hapmap];0.96[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13137343	0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs13149985	0.80[EUR][1000 genomes]
rs17187075	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17245723	0.82[CEU][hapmap]
rs17246501	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17246745	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17247314	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2240720	0.93[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.81[EUR][1000 genomes]
rs2240721	0.93[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes]
rs2240722	0.81[EUR][1000 genomes]
rs2240724	0.89[CEU][hapmap];0.87[CHB][hapmap];0.96[JPT][hapmap];0.82[EUR][1000 genomes]
rs2276961	0.81[EUR][1000 genomes]
rs34501273	0.95[EUR][1000 genomes]
rs34709913	0.80[EUR][1000 genomes]
rs35099040	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35438220	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35866697	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35908990	0.88[ASN][1000 genomes]
rs3733585	0.85[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs3733586	0.99[AFR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3756236	0.93[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3756237	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3756238	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3796829	0.83[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3796832	0.88[EUR][1000 genomes]
rs3796836	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3796842	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs4235346	0.85[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.81[EUR][1000 genomes]
rs4280729	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4292328	0.85[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.85[ASN][1000 genomes]
rs4447863	0.81[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs4622999	0.89[CEU][hapmap];0.95[CHB][hapmap];0.96[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4697698	0.85[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.81[EUR][1000 genomes]
rs62295971	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6449183	0.85[ASN][1000 genomes]
rs6449196	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6827754	0.81[CEU][hapmap]
rs6844329	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6845554	0.81[CEU][hapmap]
rs6849717	0.85[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6857693	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73227883	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7375599	0.85[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7375643	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7678012	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7679916	0.85[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs7681699	0.85[ASN][1000 genomes]
rs882222	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs882223	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs998675	0.85[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs998676	0.85[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv1010249	chr4:9716101-10086188	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv878672	chr4:9786732-10008305	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv878677	chr4:9797703-10008305	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv878681	chr4:9802853-10397327	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
8	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
9	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
10	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
11	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
12	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
13	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
14	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
15	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
16	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
17	esv2763339	chr4:9858426-10056376	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv878684	chr4:9863698-9998440	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv878686	chr4:9893403-10008305	Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv537026	chr4:9903566-10262258	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
21	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
22	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
23	esv2752052	chr4:9911872-10313111	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
24	nsv878687	chr4:9912101-10008305	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv878688	chr4:9915850-10038112	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
26	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
27	nsv878689	chr4:9943185-10008305	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
28	nsv878690	chr4:9944650-10008305	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
29	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
30	nsv532706	chr4:9948018-10451450	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
31	nsv1013022	chr4:9961220-10230042	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
32	nsv537028	chr4:9961220-10230042	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
33	nsv537029	chr4:9961220-10262258	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
34	nsv878691	chr4:9966477-10418078	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
35	nsv1013487	chr4:9972011-10320963	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
36	nsv829857	chr4:9982514-10155835	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
37	nsv469621	chr4:9987670-10142287	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
38	nsv482719	chr4:9987670-10142287	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12499857	WDR1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:9963400-9996400	Weak transcription	Adipose Nuclei	Adipose
2	chr4:9977800-10003600	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:9978200-9996400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:9978800-9995400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:9979800-9995600	Weak transcription	Colonic Mucosa	Colon
6	chr4:9980800-10007200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:9982800-10002800	Weak transcription	Gastric	stomach
8	chr4:9983000-9995600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:9985800-9997400	Strong transcription	HMEC	breast
10	chr4:9987400-9996400	Weak transcription	Aorta	Aorta
11	chr4:9987600-9998000	Weak transcription	Ovary	ovary
12	chr4:9987600-10008000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:9988200-9996400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:9988400-9996800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:9989200-9999600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:9989600-9997600	Strong transcription	HepG2	liver
17	chr4:9989600-9997800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:9989600-9998800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:9990000-9997600	Weak transcription	Stomach Mucosa	stomach
20	chr4:9990400-9999600	Weak transcription	Fetal Stomach	stomach
21	chr4:9991400-10001400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:9991600-9995400	Strong transcription	Fetal Intestine Large	intestine
23	chr4:9991600-9999000	Strong transcription	NHEK	skin
24	chr4:9991600-10007200	Weak transcription	Colon Smooth Muscle	Colon
25	chr4:9991800-9998000	Weak transcription	Right Ventricle	heart
26	chr4:9992400-10006800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr4:9992600-9997800	Weak transcription	Brain Anterior Caudate	brain
28	chr4:9992600-10007200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr4:9992800-9997400	Weak transcription	Brain Substantia Nigra	brain
30	chr4:9992800-9997800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr4:9993000-10006800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr4:9993200-10006800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr4:9993600-9995400	Strong transcription	Duodenum Mucosa	Duodenum
34	chr4:9993600-10008000	Weak transcription	Left Ventricle	heart
35	chr4:9993800-9998200	Strong transcription	Liver	Liver
36	chr4:9995000-9996200	Strong transcription	Esophagus	oesophagus
37	chr4:9995200-9995400	Enhancers	Pancreas	Pancrea
38	chr4:9995200-9996800	Enhancers	GM12878-XiMat	blood
39	chr4:9995200-9999200	Genic enhancers	Fetal Intestine Small	intestine

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