Variant report

Variant	rs6849273
Chromosome Location	chr4:10021595-10021596
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:10020845-10021950	HepG2	liver:	n/a	n/a
2	POLR2A	chr4:10020462-10021651	GM19193	blood:	n/a	n/a
3	POLR2A	chr4:10020835-10021893	HepG2	liver:	n/a	n/a
4	POLR2A	chr4:10020352-10021664	GM12892	blood:	n/a	n/a
5	POLR2A	chr4:10020414-10021832	HepG2	liver:	n/a	n/a
6	POLR2A	chr4:10020443-10021765	GM12892	blood:	n/a	n/a
7	POLR2A	chr4:10020894-10022065	HepG2	liver:	n/a	n/a
8	ELF1	chr4:10020267-10021643	GM12878	blood:	n/a	chr4:10020931-10020942
9	MYC	chr4:10020506-10021703	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:10019361..10022054-chr4:10108000..10110178,2	K562	blood:
2	chr4:10020622..10022306-chr4:10022841..10025006,2	MCF-7	breast:
3	chr4:10019661..10022849-chr4:10023062..10025452,3	K562	blood:

Variant related genes	Relation type
SLC2A9	TF binding region
ENSG00000109667	Chromatin interaction
ENSG00000071127	Chromatin interaction

Extended variants
information (count: 180 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs10001964	0.85[JPT][hapmap]
rs10018204	1.00[JPT][hapmap]
rs10030570	0.85[ASN][1000 genomes]
rs10516198	0.86[CHB][hapmap]
rs1079128	0.85[JPT][hapmap]
rs10939665	0.86[CEU][hapmap]
rs10939669	0.86[CEU][hapmap]
rs10939671	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10939672	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1122966	0.85[ASN][1000 genomes]
rs11722930	0.86[CEU][hapmap]
rs11723591	0.83[CEU][hapmap]
rs11724510	0.85[JPT][hapmap]
rs11727087	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs11727199	0.86[CEU][hapmap]
rs11731110	0.86[CEU][hapmap]
rs12498150	0.85[JPT][hapmap]
rs12498956	0.85[JPT][hapmap]
rs12500805	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12504565	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12506122	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12506455	0.86[CEU][hapmap]
rs12508991	0.86[CEU][hapmap]
rs13101785	0.86[CEU][hapmap]
rs13103497	0.88[CHB][hapmap]
rs13103879	0.84[CEU][hapmap]
rs13110307	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13115776	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13120348	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13122689	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13124007	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13125029	1.00[JPT][hapmap]
rs13129453	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13133766	0.86[CEU][hapmap]
rs13137343	0.86[CEU][hapmap]
rs13139055	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13144709	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13146686	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13328050	0.85[JPT][hapmap]
rs17185835	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs17185870	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs17187075	0.86[CEU][hapmap]
rs17245436	0.85[JPT][hapmap]
rs17245723	0.85[JPT][hapmap]
rs17247314	0.85[CEU][hapmap]
rs2018643	0.85[JPT][hapmap]
rs2240720	0.86[CEU][hapmap]
rs2240721	0.85[CEU][hapmap]
rs2240724	0.90[CEU][hapmap]
rs2241483	0.81[CEU][hapmap]
rs28449404	0.85[ASN][1000 genomes]
rs3733585	0.85[CEU][hapmap]
rs3756236	0.86[CEU][hapmap]
rs3775940	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775945	0.85[ASN][1000 genomes]
rs3796830	0.85[ASN][1000 genomes]
rs3796833	0.85[ASN][1000 genomes]
rs3796834	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs3796837	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796842	0.86[CEU][hapmap]
rs4235347	0.85[JPT][hapmap]
rs4292329	0.85[JPT][hapmap]
rs4311316	0.85[JPT][hapmap]
rs4312757	0.85[JPT][hapmap]
rs4314284	0.85[JPT][hapmap]
rs4318649	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4318650	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339211	0.82[JPT][hapmap]
rs4447861	0.85[JPT][hapmap]
rs4455410	0.85[JPT][hapmap]
rs4459989	0.85[JPT][hapmap]
rs4459990	0.85[JPT][hapmap]
rs4473652	0.85[JPT][hapmap]
rs4473653	0.85[JPT][hapmap]
rs4515163	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs4519796	0.85[JPT][hapmap]
rs4529049	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4533775	0.85[JPT][hapmap]
rs4543113	0.85[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4575994	0.81[EUR][1000 genomes]
rs4580649	0.85[JPT][hapmap]
rs4621431	0.85[JPT][hapmap]
rs4622999	0.85[CEU][hapmap]
rs4697914	1.00[JPT][hapmap]
rs55811736	0.85[ASN][1000 genomes]
rs59871456	0.85[ASN][1000 genomes]
rs6449155	0.85[JPT][hapmap]
rs6449156	0.85[JPT][hapmap]
rs6449157	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs6449159	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs6449171	0.85[JPT][hapmap]
rs6449172	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs6449174	0.85[JPT][hapmap]
rs6449176	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs6449178	0.85[JPT][hapmap]
rs6449179	0.85[JPT][hapmap]
rs6449201	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs6449202	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs6449217	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6449237	0.86[CHB][hapmap]
rs6449238	0.85[ASN][1000 genomes]
rs6814664	0.85[JPT][hapmap]
rs6815001	0.84[JPT][hapmap]
rs6819833	0.85[ASN][1000 genomes]
rs6820188	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6820230	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs6823361	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs6827754	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827785	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6829727	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6834893	1.00[JPT][hapmap]
rs6836706	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs6839490	0.85[JPT][hapmap]
rs6843873	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs6844316	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs6845554	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849729	1.00[JPT][hapmap]
rs6850684	0.85[JPT][hapmap]
rs6852441	0.85[JPT][hapmap]
rs6856127	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs6857001	0.85[ASN][1000 genomes]
rs714815	0.85[JPT][hapmap]
rs73229818	0.85[ASN][1000 genomes]
rs73229828	0.85[ASN][1000 genomes]
rs7375587	0.85[JPT][hapmap]
rs7376948	0.85[JPT][hapmap]
rs7378305	0.85[JPT][hapmap]
rs7378340	0.85[JPT][hapmap]
rs7435196	0.85[JPT][hapmap]
rs7442336	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7658170	0.85[JPT][hapmap]
rs7672947	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs7676733	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs7677710	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs7678012	0.86[CEU][hapmap]
rs7679916	0.85[CEU][hapmap]
rs7683283	0.85[JPT][hapmap]
rs7686538	0.84[JPT][hapmap]
rs7694997	0.85[JPT][hapmap]
rs7697004	0.85[ASN][1000 genomes]
rs7697416	0.85[ASN][1000 genomes]
rs881971	0.85[JPT][hapmap]
rs9291645	0.86[CHB][hapmap]
rs9993410	0.85[JPT][hapmap]
rs9994266	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv1010249	chr4:9716101-10086188	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv878681	chr4:9802853-10397327	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
6	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
7	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
8	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
9	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
10	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
11	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
12	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
13	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
14	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
15	esv2763339	chr4:9858426-10056376	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv537026	chr4:9903566-10262258	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
17	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
18	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
19	esv2752052	chr4:9911872-10313111	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
20	nsv878688	chr4:9915850-10038112	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
22	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
23	nsv532706	chr4:9948018-10451450	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
24	nsv1013022	chr4:9961220-10230042	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
25	nsv537028	chr4:9961220-10230042	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
26	nsv537029	chr4:9961220-10262258	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
27	nsv878691	chr4:9966477-10418078	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
28	nsv1013487	chr4:9972011-10320963	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
29	nsv829857	chr4:9982514-10155835	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
30	nsv469621	chr4:9987670-10142287	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
31	nsv482719	chr4:9987670-10142287	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
32	nsv1008067	chr4:10004664-10262258	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
33	nsv537030	chr4:10004664-10262258	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
34	nsv593691	chr4:10013173-10050141	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
35	nsv869057	chr4:10013411-10875454	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10019600-10022200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:10020000-10021600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr4:10020200-10024600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr4:10020600-10021600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr4:10020600-10021600	Transcr. at gene 5' and 3'	HepG2	liver
6	chr4:10020600-10023400	Flanking Active TSS	Liver	Liver
7	chr4:10020800-10021600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr4:10020800-10021600	Flanking Active TSS	Duodenum Mucosa	Duodenum
9	chr4:10020800-10021600	Flanking Active TSS	Right Ventricle	heart
10	chr4:10020800-10021600	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr4:10020800-10022600	Flanking Active TSS	HMEC	breast
12	chr4:10020800-10023000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:10020800-10023200	Enhancers	Small Intestine	intestine
14	chr4:10021000-10021600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:10021000-10021600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr4:10021000-10021800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr4:10021000-10021800	Enhancers	Spleen	Spleen
18	chr4:10021000-10022400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:10021000-10022600	Enhancers	Esophagus	oesophagus
20	chr4:10021000-10023000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:10021000-10023200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr4:10021000-10024800	Enhancers	Lung	lung
23	chr4:10021200-10021600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
24	chr4:10021200-10021600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:10021200-10021600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr4:10021200-10021600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr4:10021200-10021600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr4:10021200-10021600	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr4:10021200-10021600	Enhancers	Fetal Thymus	thymus
30	chr4:10021200-10021800	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr4:10021200-10022000	Enhancers	Stomach Mucosa	stomach
32	chr4:10021200-10022000	Transcr. at gene 5' and 3'	NHEK	skin
33	chr4:10021200-10022400	Weak transcription	HSMM	muscle
34	chr4:10021200-10022600	Enhancers	Placenta	Placenta
35	chr4:10021200-10022800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr4:10021200-10023000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr4:10021200-10024200	Enhancers	Fetal Stomach	stomach
38	chr4:10021200-10025600	Enhancers	Primary B cells from cord blood	blood
39	chr4:10021200-10025800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr4:10021200-10026400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr4:10021200-10027400	Enhancers	Right Atrium	heart
42	chr4:10021400-10021600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr4:10021400-10021600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr4:10021400-10021600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr4:10021400-10021600	Enhancers	Primary T cells fromperipheralblood	blood
46	chr4:10021400-10021600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr4:10021400-10021600	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr4:10021400-10021600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr4:10021400-10021600	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr4:10021400-10021600	Enhancers	Brain Anterior Caudate	brain

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