Variant report

Variant	rs10006616
Chromosome Location	chr4:77917535-77917536
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10000055	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10002970	1.00[AMR][1000 genomes]
rs10003222	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10006033	1.00[LWK][hapmap]
rs10013521	1.00[AMR][1000 genomes]
rs10017180	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[AMR][1000 genomes]
rs10017391	1.00[AMR][1000 genomes]
rs10024538	1.00[AMR][1000 genomes]
rs10049647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10518161	1.00[AMR][1000 genomes]
rs11559161	1.00[LWK][hapmap];1.00[MKK][hapmap]
rs17002303	1.00[AMR][1000 genomes]
rs17002311	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17002313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17002323	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17002334	1.00[LWK][hapmap];1.00[MKK][hapmap]
rs17002346	1.00[LWK][hapmap];1.00[MKK][hapmap]
rs28394586	0.92[AFR][1000 genomes]
rs28638241	1.00[AMR][1000 genomes]
rs28639925	1.00[AMR][1000 genomes]
rs28657683	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28670872	1.00[AMR][1000 genomes]
rs28681642	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28682963	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28697276	1.00[AMR][1000 genomes]
rs9307223	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9884835	1.00[AMR][1000 genomes]
rs9991713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9992021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77893200-77918800	Weak transcription	A549	lung
2	chr4:77903200-77919800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr4:77903600-77936000	Weak transcription	Esophagus	oesophagus
4	chr4:77904600-77919000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:77906000-77918800	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:77906400-77917600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:77907800-77918400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:77908400-77918000	Weak transcription	Fetal Intestine Large	intestine
9	chr4:77908400-77919400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr4:77908600-77918600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:77908600-77918600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:77909200-77917600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:77909200-77917600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:77909200-77918200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr4:77909200-77918200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr4:77909200-77918400	Weak transcription	Liver	Liver
17	chr4:77909200-77918800	Weak transcription	Gastric	stomach
18	chr4:77909200-77919400	Weak transcription	Brain Anterior Caudate	brain
19	chr4:77909800-77917800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:77910800-77919600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr4:77912000-77917600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr4:77912000-77918000	Weak transcription	Fetal Intestine Small	intestine
23	chr4:77912000-77918200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr4:77912000-77918400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:77912200-77918600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr4:77912400-77918200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr4:77912600-77918200	Weak transcription	Fetal Lung	lung
28	chr4:77912600-77918600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr4:77912600-77923000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr4:77913000-77918400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr4:77914800-77918200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr4:77914800-77918600	Weak transcription	Primary B cells from cord blood	blood
33	chr4:77914800-77923400	Weak transcription	Brain Angular Gyrus	brain
34	chr4:77915400-77917600	Enhancers	Fetal Thymus	thymus
35	chr4:77915400-77918600	Weak transcription	Lung	lung
36	chr4:77915600-77924000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr4:77915600-77924000	Weak transcription	Right Atrium	heart
38	chr4:77915600-77936800	Weak transcription	Brain Substantia Nigra	brain
39	chr4:77915800-77917600	Enhancers	Primary T cells fromperipheralblood	blood
40	chr4:77915800-77917600	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr4:77915800-77917600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr4:77915800-77917800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr4:77915800-77917800	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr4:77915800-77917800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr4:77915800-77918000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr4:77915800-77918200	Weak transcription	Aorta	Aorta
47	chr4:77915800-77918200	Weak transcription	Left Ventricle	heart
48	chr4:77915800-77918400	Weak transcription	Spleen	Spleen
49	chr4:77915800-77919600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr4:77915800-77919600	Weak transcription	Pancreas	Pancrea

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